Curated BLAST for Genomes

 

Curated BLAST

Searching in Phaeobacter inhibens BS107 (Phaeo)

Found 42 curated entries in PaperBLAST's database that match '1.4.1.2' as complete word(s).

These curated entries have 33 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Phaeobacter inhibens BS107, or try another query

PGA1_c08740: glutamate dehydrogenase GluD
is similar to:
PaperBLAST

P00366: glutamate dehydrogenase (EC 1.4.1.2); glutamate dehydrogenase [NAD(P)+] (EC 1.4.1.3) from Bos taurus

44% id,
88% cov

P96110: trimer complex (EC 1.4.1.2) from Thermotoga maritima

45% id,
86% cov

Q43314: glutamate dehydrogenase (EC 1.4.1.2); glutamate dehydrogenase [NAD(P)+] (EC 1.4.1.3) from Arabidopsis thaliana

46% id,
83% cov

More...

PGA1_c20500: leucine dehydrogenase Ldh
is similar to:
PaperBLAST

Q977U6: glutamate dehydrogenase (EC 1.4.1.2) from Haloferax mediterranei

31% id,
77% cov

DHE2_PYRCJ / A3MUY9: NAD(+)-dependent glutamate dehydrogenase; NAD-GDH; NAD-specific glutamate dehydrogenase; EC 1.4.1.2 from Pyrobaculum calidifontis
A3MUY9: glutamate dehydrogenase (EC 1.4.1.2) from Pyrobaculum calidifontis

29% id,
81% cov

DHE2_HALSI / P29051: NAD-specific glutamate dehydrogenase A; NAD-GDH A; EC 1.4.1.2 from Halobacterium salinarum
gdhA / GB|AAW19068.1: glutamate dehydrogenase; EC 1.4.1.2 from Halobacterium salinarum
P29051: glutamate dehydrogenase (EC 1.4.1.2) from Halobacterium salinarum

30% id,
78% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory