Curated BLAST for Genomes

 

Curated BLAST

Searching in Phaeobacter inhibens BS107 (Phaeo)

Found 2 curated entries in PaperBLAST's database that match '1.4.3.10'.

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 11 relevant proteins in Phaeobacter inhibens BS107, or try another query

PGA1_c33440: flavoprotein, HI0933 family/uncharacterized flavoprotein, PP_4765 family
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

31% id,
27% cov

PGA1_262p01500: sarcosine oxidase subunit alpha
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

44% id,
14% cov

PGA1_c11510: gamma-glutamylputrescine oxidoreductase PuuB
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

39% id,
14% cov

PGA1_c08760: sarcosine oxidase subunit alpha
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

39% id,
14% cov

PGA1_c19150: sarcosine oxidase subunit alpha
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

35% id,
14% cov

PGA1_c21790: fumarate reductase/succinate dehydrogenase flavoprotein-like protein
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

40% id,
12% cov

PGA1_c00410: 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase MhpA
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

41% id,
10% cov

PGA1_c12810: pyridine nucleotide-disulphide oxidoreductase-like protein
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

49% id,
9% cov

PGA1_c25710: putative N-methylproline demethylase StcD
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

49% id,
8% cov

PGA1_c25330: 2,4-dienoyl-CoA reductase [NADPH]
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

38% id,
9% cov

PGA1_c03550: dihydrolipoyl dehydrogenase 2
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

44% id,
8% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory