Curated BLAST for Genomes

 

Curated BLAST

Searching in Phaeobacter inhibens BS107 (Phaeo)

Found 13 curated entries in PaperBLAST's database that match '2.1.2.10' as complete word(s).

These curated entries have 8 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Phaeobacter inhibens BS107, or try another query

PGA1_78p00290: aminomethyltransferase GcvT
is similar to:
PaperBLAST

PfGW456L13_1866: Aminomethyltransferase (EC 2.1.2.10) from Pseudomonas fluorescens

48% id,
99% cov

PS417_22370: Aminomethyltransferase (EC 2.1.2.10) from Pseudomonas simiae

48% id,
99% cov

Pf6N2E2_5556: Aminomethyltransferase (EC 2.1.2.10) from Pseudomonas fluorescens

48% id,
99% cov

More...

PGA1_262p01830: putative aminomethyltransferase
is similar to:
PaperBLAST

GCST_HUMAN / P48728: Aminomethyltransferase, mitochondrial; Glycine cleavage system T protein; GCVT; EC 2.1.2.10 from Homo sapiens
AMT / P48728: aminomethyltransferase (EC 2.1.2.10) from Homo sapiens

29% id,
89% cov

GCST_CHICK / P28337: Aminomethyltransferase, mitochondrial; Glycine cleavage system T protein; GCVT; EC 2.1.2.10 from Gallus gallus
AMT / P28337: aminomethyltransferase (EC 2.1.2.10) from Gallus gallus

25% id,
94% cov

PGA1_c23390: putative sarcosine dehydrogenase
is similar to:
PaperBLAST

PfGW456L13_1866: Aminomethyltransferase (EC 2.1.2.10) from Pseudomonas fluorescens

28% id,
91% cov

PGA1_c14040: dimethylglycine dehydrogenase DmgdH
is similar to:
PaperBLAST

BWI76_RS23880: Aminomethyltransferase (EC 2.1.2.10) from Klebsiella michiganensis

28% id,
89% cov

PGA1_c25540: dimethylglycine dehydrogenase DmgdH
is similar to:
PaperBLAST

Pf6N2E2_5556: Aminomethyltransferase (EC 2.1.2.10) from Pseudomonas fluorescens

26% id,
89% cov

PS417_22370: Aminomethyltransferase (EC 2.1.2.10) from Pseudomonas simiae

26% id,
89% cov

PfGW456L13_1866: Aminomethyltransferase (EC 2.1.2.10) from Pseudomonas fluorescens

24% id,
89% cov

PGA1_c08760: sarcosine oxidase subunit alpha
is similar to:
PaperBLAST

PfGW456L13_1866: Aminomethyltransferase (EC 2.1.2.10) from Pseudomonas fluorescens

25% id,
90% cov

PGA1_c33110: sarcosine dehydrogenase
is similar to:
PaperBLAST

GCST_HUMAN / P48728: Aminomethyltransferase, mitochondrial; Glycine cleavage system T protein; GCVT; EC 2.1.2.10 from Homo sapiens
AMT / P48728: aminomethyltransferase (EC 2.1.2.10) from Homo sapiens

26% id,
83% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory