Curated BLAST for Genomes

 

Curated BLAST

Searching in Phaeobacter inhibens BS107 (Phaeo)

Found 173 curated entries in PaperBLAST's database that match '2.4.1.13'.

These curated entries have 110 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Phaeobacter inhibens BS107, or try another query

PGA1_c14120: single-stranded DNA-binding protein Ssb
is similar to:
PaperBLAST

BAA08304.1: sucrose-phosphate synthase (Sps1) (EC 2.4.1.13)

68% id,
3% cov

PGA1_c23710: putative protein HflK
is similar to:
PaperBLAST

BAA08304.1: sucrose-phosphate synthase (Sps1) (EC 2.4.1.13)

80% id,
2% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1464827-1465438 (frame -2) on PGA1_c
is similar to:
PaperBLAST

BAA08304.1: sucrose-phosphate synthase (Sps1) (EC 2.4.1.13)
Also see hits to annotated proteins above

58% id,
4% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory