Curated BLAST for Genomes

 

Curated BLAST

Searching in Phaeobacter inhibens BS107 (Phaeo)

Found 15 curated entries in PaperBLAST's database that match '2.7.1.12' as complete word(s).

These curated entries have 10 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Phaeobacter inhibens BS107, or try another query

PGA1_c14090: shikimate kinase AroK
is similar to:
PaperBLAST

BPHYT_RS16720: Gluconokinase (EC 2.7.1.12) from Burkholderia phytofirmans

25% id,
98% cov

Q8NMT0: gluconokinase (EC 2.7.1.12) from Corynebacterium glutamicum

28% id,
80% cov

GntV / b4268: D-gluconate kinase, thermosensitive (EC 2.7.1.12) from Escherichia coli
idnK / GB|AAC77225.1: gluconokinase; EC 2.7.1.12 from Escherichia coli
idnK / P39208: D-gluconate kinase, thermosensitive (EC 2.7.1.12) from Escherichia coli

24% id,
89% cov

More...

PGA1_c20670: TRAP transporter, subunit DctQ
is similar to:
PaperBLAST

Psest_2123: fusion of gluconokinase (EC 2.7.1.12) and the small permease component of the D-gluconate TRAP transporter from Pseudomonas stutzeri

24% id,
32% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory