Curated BLAST for Genomes


Curated BLAST

Searching in Phaeobacter inhibens BS107 (Phaeo)

Found 101 curated entries in PaperBLAST's database that match ''.

These curated entries have 72 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Phaeobacter inhibens BS107, or try another query

PGA1_c33510: tetraacyldisaccharide 4'-kinase LpxK
is similar to:

LPXK_ECOLI / P27300: Tetraacyldisaccharide 4'-kinase; Lipid A 4'-kinase; EC from Escherichia coli
YcaH / b0915: tetraacyldisaccharide 4'-kinase (EC from Escherichia coli
lpxK / P27300: tetraacyldisaccharide 4'-kinase (EC from Escherichia coli

35% id,
91% cov

LPXK_ARATH / Q8LEA0: Probable tetraacyldisaccharide 4'-kinase, mitochondrial; Protein LIPID X 4'-kinase; AtLpxK; EC from Arabidopsis thaliana

37% id,
42% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1960137-1960685 (frame +3) on PGA1_c
is similar to:

P54674: phosphatidylinositol 3-kinase (EC from Dictyostelium discoideum

27% id,
8% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory