Curated BLAST for Genomes

 

Curated BLAST

Searching in Phaeobacter inhibens BS107 (Phaeo)

Found 31 curated entries in PaperBLAST's database that match '2.7.1.15' as complete word(s).

These curated entries have 24 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Phaeobacter inhibens BS107, or try another query

PGA1_c34980: putative pfkB family carbohydrate kinase
is similar to:
PaperBLAST

SMc01103: Ribokinase (EC 2.7.1.15) from Sinorhizobium meliloti

38% id,
97% cov

RBSK_SCHPO / O60116: Ribokinase; RK; EC 2.7.1.15 from Schizosaccharomyces pombe

35% id,
96% cov

AO356_00950: Ribokinase (EC 2.7.1.15) from Pseudomonas fluorescens

35% id,
96% cov

More...

PGA1_c15060: carbohydrate kinase, PfkB family
is similar to:
PaperBLAST

HSERO_RS11500: Ribokinase (EC 2.7.1.15) from Herbaspirillum seropedicae

29% id,
94% cov

AO356_00950: Ribokinase (EC 2.7.1.15) from Pseudomonas fluorescens

25% id,
94% cov

Pf1N1B4_6031: Ribokinase (EC 2.7.1.15) from Pseudomonas fluorescens

25% id,
94% cov

More...

PGA1_c07240: putative 5-dehydro-2-deoxygluconokinase
is similar to:
PaperBLAST

HSERO_RS11500: Ribokinase (EC 2.7.1.15) from Herbaspirillum seropedicae

28% id,
97% cov

AO356_00950: Ribokinase (EC 2.7.1.15) from Pseudomonas fluorescens

27% id,
98% cov

RBSK_ECOLI / P0A9J6: Ribokinase; RK; EC 2.7.1.15 from Escherichia coli
RbsK / b3752: ribokinase (EC 2.7.1.15) from Escherichia coli
rbsK / P0A9J6: ribokinase (EC 2.7.1.15) from Escherichia coli

27% id,
98% cov

More...

PGA1_c29050: putative carbohydrate kinase, PfkB family
is similar to:
PaperBLAST

RBSK_ARATH / A1A6H3: Ribokinase; AtRBSK; RK; EC 2.7.1.15 from Arabidopsis thaliana
RBSK / A1A6H3: ribokinase (EC 2.7.1.15) from Arabidopsis thaliana
A1A6H3: ribokinase (EC 2.7.1.15) from Arabidopsis thaliana

26% id,
74% cov

PGA1_c28020: fructokinase Frk
is similar to:
PaperBLAST

RBSK_SCHPO / O60116: Ribokinase; RK; EC 2.7.1.15 from Schizosaccharomyces pombe

23% id,
83% cov

AO353_20835: Ribokinase (EC 2.7.1.15) from Pseudomonas fluorescens

27% id,
43% cov

HSERO_RS11500: Ribokinase (EC 2.7.1.15) from Herbaspirillum seropedicae

35% id,
30% cov

PGA1_c23740: ribose-5-phosphate isomerase A
is similar to:
PaperBLAST

RBSKI_FRUSL / P83534: Bifunctional ribokinase/ribose-5-phosphate isomerase A; EC 2.7.1.15; EC 5.3.1.6 from Fructilactobacillus sanfranciscensis

38% id,
40% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory