Curated BLAST for Genomes


Curated BLAST

Searching in Phaeobacter inhibens BS107 (Phaeo)

Found 12 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Phaeobacter inhibens BS107, or try another query

PGA1_c07360: 2-dehydro-3-deoxygalactonokinase DgoK
is similar to:

YidV / b3693: 2-dehydro-3-deoxygalactonokinase (EC; EC from Escherichia coli
dgoK / P31459: 2-dehydro-3-deoxygalactonokinase (EC from Escherichia coli

32% id,
96% cov

PGA1_c07240: putative 5-dehydro-2-deoxygluconokinase
is similar to:

kdgK / P45416: 2-dehydro-3-deoxy-D-gluconate kinase (EC from Dickeya dadantii

25% id,
100% cov

YhjI / b3526: 2-dehydro-3-deoxygluconokinase (EC; EC from Escherichia coli
kdgK / P37647: 2-dehydro-3-deoxygluconokinase (EC from Escherichia coli

24% id,
99% cov

KDGK_SACS2 / Q97U29: 2-dehydro-3-deoxygluconokinase/2-dehydro-3-deoxygalactonokinase; 2-dehydro-3-deoxyglucono/galactono-kinase; 2-keto-3-deoxy-galactonokinase; 2-keto-3-deoxygluconokinase; 3-deoxy-2-oxo-D-gluconate kinase; KDG kinase; KDGal kinase; EC from Saccharolobus solfataricus
kdgK / Q97U29: 2-dehydro-3-deoxyglucono/2-dehydro-3-deoxygalactonokinase monomer (EC from Saccharolobus solfataricus
Q97U29: 2-dehydro-3-deoxyglucono/galactono-kinase (EC from Saccharolobus solfataricus

25% id,
88% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory