Curated BLAST for Genomes


Curated BLAST

Searching in Phaeobacter inhibens BS107 (Phaeo)

Found 41 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 33 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Phaeobacter inhibens BS107, or try another query

PGA1_c05420: glucokinase Glk
is similar to:

PGA1_c05420: glucokinase (EC from Phaeobacter inhibens

100% id,
100% cov

Dshi_1655: glucokinase (EC from Dinoroseobacter shibae

33% id,
98% cov

PS417_22685: Glucokinase (EC from Pseudomonas simiae

29% id,
98% cov

PGA1_262p00420: Transcriptional regulator/sugar kinase
is similar to:

GLK_STRCO / P0A4E1: Glucokinase; Glucose kinase; ORF 3; EC from Streptomyces coelicolor
glkA: glucokinase; EC from Streptomyces coelicolor
P0A4E1: glucokinase (EC from Streptomyces coelicolor

31% id,
97% cov

B1VZT1: glucokinase (EC from Streptomyces griseus

30% id,
98% cov

Q8RDE9: glucokinase (EC from Caldanaerobacter subterraneus

30% id,
99% cov


PGA1_c28070: putative transcriptional regulator, marR family
is similar to:

Q8RDE9: glucokinase (EC from Caldanaerobacter subterraneus

25% id,
55% cov

PGA1_c34300: hydantoinase / oxoprolinase family protein
is similar to:

GLK_PYRCJ / A3MUZ0: Glucokinase; ATP-dependent glucokinase; ATP-GLK; Glucose kinase; EC from Pyrobaculum calidifontis
A3MUZ0: glucokinase (EC from Pyrobaculum calidifontis

36% id,
24% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory