Curated BLAST for Genomes


Curated BLAST

Searching in Phaeobacter inhibens BS107 (Phaeo)

Found 19 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 13 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Phaeobacter inhibens BS107, or try another query

PGA1_c14090: shikimate kinase AroK
is similar to:

thrB / B8DPL9: homoserine kinase (EC from Desulfovibrio vulgaris
DvMF_0971: Homoserine kinase (EC: from Desulfovibrio vulgaris

32% id,
79% cov

PGA1_c03340: putative 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
is similar to:

KHSE_ECOLI / P00547: Homoserine kinase; HK; HSK; EC from Escherichia coli
ThrB / b0003: homoserine kinase (EC from Escherichia coli
thrB / GB|BAB96580.2: homoserine kinase; EC from Escherichia coli
thrB / P00547: homoserine kinase (EC from Escherichia coli

25% id,
91% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory