Curated BLAST for Genomes


Curated BLAST

Searching in Phaeobacter inhibens BS107 (Phaeo)

Found 22 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 17 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Phaeobacter inhibens BS107, or try another query

PGA1_c27910: putative ATPase, BadF/BadG/BcrA/BcrD type
is similar to:

PGA1_c27910: N-acetylglucosamine kinase (EC from Phaeobacter inhibens

100% id,
100% cov

Sama_0944: N-acetylglucosamine kinase (EC from Shewanella amazonensis

30% id,
93% cov

Shewana3_3114: N-acetylglucosamine kinase (EC from Shewanella sp.

30% id,
93% cov


PGA1_262p00420: Transcriptional regulator/sugar kinase
is similar to:

CA265_RS11300: N-acetylglucosamine kinase (EC from Pedobacter sp.

29% id,
97% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

2927579-2928829 (frame +2) on PGA1_c
is similar to:

rokA / Q5GBH5: glucokinase / N-acetylglucosamine kinase / mannokinase (EC; EC; EC from Bacteroides fragilis

28% id,
50% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory