Curated BLAST for Genomes

 

Curated BLAST

Searching in Phaeobacter inhibens BS107 (Phaeo)

Found 53 curated entries in PaperBLAST's database that match '2.7.1.8'.

These curated entries have 36 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Phaeobacter inhibens BS107, or try another query

PGA1_c28020: fructokinase Frk
is similar to:
PaperBLAST

SM_b21217: glucosamine kinase (EC 2.7.1.8) from Sinorhizobium meliloti

26% id,
93% cov

PGA1_c34750: putative aminotransferase class 3
is similar to:
PaperBLAST

HYKK_HUMAN / A2RU49: Hydroxylysine kinase; 5-hydroxy-L-lysine kinase; Aminoglycoside phosphotransferase domain-containing protein 1; EC 2.7.1.81 from Homo sapiens
A2RU49: hydroxylysine kinase (EC 2.7.1.81) from Homo sapiens

26% id,
89% cov

PGA1_c15050: Uncharacterized enzyme involved in pigment biosynthesis
is similar to:
PaperBLAST

YOW5_SCHPO / Q9USY1: Pseudouridine-metabolizing bifunctional protein C1861.05; EC 4.2.1.70; EC 2.7.1.83 from Schizosaccharomyces pombe

50% id,
41% cov

PGA1_c15060: carbohydrate kinase, PfkB family
is similar to:
PaperBLAST

PUKI_ARATH / Q94AT3: Pseudouridine kinase; EC 2.7.1.83 from Arabidopsis thaliana

23% id,
63% cov

PGA1_c11880: putative ATP-NAD kinase
is similar to:
PaperBLAST

POS5_SCHPO / Q9UT98: NADH kinase pos5, mitochondrial; EC 2.7.1.86 from Schizosaccharomyces pombe

33% id,
41% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. Except for 3 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1564262-1565209 (frame -2) on PGA1_c
is similar to:
PaperBLAST

YOW5_SCHPO / Q9USY1: Pseudouridine-metabolizing bifunctional protein C1861.05; EC 4.2.1.70; EC 2.7.1.83 from Schizosaccharomyces pombe
Also see hits to annotated proteins above

49% id,
42% cov

2022918-2023316 (frame -1) on PGA1_c
is similar to:
PaperBLAST

SM_b21217: glucosamine kinase (EC 2.7.1.8) from Sinorhizobium meliloti
Also see hits to annotated proteins above

42% id,
20% cov

51876-52514 (frame -1) on PGA1_c
is similar to:
PaperBLAST

CHKA_HUMAN / P35790: Choline kinase alpha; CK; CHETK-alpha; Ethanolamine kinase; EK; EC 2.7.1.32; EC 2.7.1.82 from Homo sapiens

57% id,
6% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory