Curated BLAST for Genomes

 

Curated BLAST

Searching in Phaeobacter inhibens BS107 (Phaeo)

Found 9 curated entries in PaperBLAST's database that match '2.7.1.8' as complete word(s).

These curated entries have 5 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Phaeobacter inhibens BS107, or try another query

PGA1_c28020: fructokinase Frk
is similar to:
PaperBLAST

SM_b21217: glucosamine kinase (EC 2.7.1.8) from Sinorhizobium meliloti

26% id,
93% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

2022918-2023316 (frame -1) on PGA1_c
is similar to:
PaperBLAST

SM_b21217: glucosamine kinase (EC 2.7.1.8) from Sinorhizobium meliloti
Also see hits to annotated proteins above

42% id,
20% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory