Curated BLAST for Genomes

 

Curated BLAST

Searching in Phaeobacter inhibens BS107 (Phaeo)

Found 67 curated entries in PaperBLAST's database that match '2.7.2.1'.

These curated entries have 45 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Phaeobacter inhibens BS107, or try another query

PGA1_c15510: glutamate 5-kinase ProB
is similar to:
PaperBLAST

PROB_ECOLI / P0A7B5: Glutamate 5-kinase; Gamma-glutamyl kinase; GK; EC 2.7.2.11 from Escherichia coli
ProB / b0242: glutamate 5-kinase (EC 2.7.2.11) from Escherichia coli
proB: glutamate 5-kinase; EC 2.7.2.11 from Escherichia coli
proB / P0A7B5: glutamate 5-kinase (EC 2.7.2.11) from Escherichia coli
P0A7B5: glutamate 5-kinase (EC 2.7.2.11) from Escherichia coli

41% id,
99% cov

Q6E235: glutamate 5-kinase (EC 2.7.2.11) from Bacillus subtilis

37% id,
96% cov

proB: glutamate 5-kinase; EC 2.7.2.11 from Campylobacter jejuni

37% id,
96% cov

More...

PGA1_c28840: acetate kinase AckA
is similar to:
PaperBLAST

ACKA_BACSU / P37877: Acetate kinase; Acetokinase; EC 2.7.2.1 from Bacillus subtilis

40% id,
99% cov

ACKA_CORGL / P77845: Acetate kinase; Acetokinase; EC 2.7.2.1 from Corynebacterium glutamicum

40% id,
98% cov

TDCD_SALTY / O06961: Propionate kinase; EC 2.7.2.15 from Salmonella typhimurium
O06961: propionate kinase (EC 2.7.2.15) from Salmonella enterica

40% id,
95% cov

More...

PGA1_c02050: acetylglutamate kinase ArgB
is similar to:
PaperBLAST

LYSZ_SULAC / Q4JAQ2: [LysW]-aminoadipate/[LysW]-glutamate kinase; EC 2.7.2.-; EC 2.7.2.17 from Sulfolobus acidocaldarius
lysZ / Q4JAQ2: [LysW}-glutamate/[LysW]-aminoadipate kinase (EC 2.7.2.17; EC 2.7.2.8) from Sulfolobus acidocaldarius

28% id,
100% cov

PGA1_c24870: phosphoribosylaminoimidazole carboxylase ATPase subunit PurK
is similar to:
PaperBLAST

PurT / b1849: phosphoribosylglycinamide formyltransferase 2 (EC 2.7.2.15; EC 2.7.2.1) from Escherichia coli
purT / P33221: phosphoribosylglycinamide formyltransferase 2 (EC 6.3.1.21; EC 2.7.2.15) from Escherichia coli

28% id,
93% cov

PGA1_c15520: gamma-glutamyl phosphate reductase ProA
is similar to:
PaperBLAST

P5CS1_ORYSJ / O04226: Delta-1-pyrroline-5-carboxylate synthase 1; OsP5CS1; EC 2.7.2.11; EC 1.2.1.41 from Oryza sativa

34% id,
58% cov

P5CS_MOUSE / Q9Z110: Delta-1-pyrroline-5-carboxylate synthase; P5CS; Aldehyde dehydrogenase family 18 member A1; EC 2.7.2.11; EC 1.2.1.41 from Mus musculus

36% id,
54% cov

P5CS1 / P54887: δ1-pyrroline-5-carboxylate synthetase (EC 1.2.1.41; EC 2.7.2.11) from Arabidopsis thaliana

34% id,
56% cov

More...

PGA1_c12600: biotin carboxylase AccA
is similar to:
PaperBLAST

PurT / b1849: phosphoribosylglycinamide formyltransferase 2 (EC 2.7.2.15; EC 2.7.2.1) from Escherichia coli
purT / P33221: phosphoribosylglycinamide formyltransferase 2 (EC 6.3.1.21; EC 2.7.2.15) from Escherichia coli

26% id,
46% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory