Curated BLAST for Genomes

 

Curated BLAST

Searching in Phaeobacter inhibens BS107 (Phaeo)

Found 6 curated entries in PaperBLAST's database that match '2.8.3.13' as complete word(s).

These curated entries have 4 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Phaeobacter inhibens BS107, or try another query

PGA1_c27870: CoA-transferase, family III
is similar to:
PaperBLAST

caiB / Q7CXU0: succinate—lglutarate CoA-transferase (EC 2.8.3.13) from Agrobacterium fabrum

57% id,
93% cov

gcdG / Q88RH1: succinyl-CoA-glutarate CoA-transferase (EC 2.8.3.13) from Pseudomonas putida

55% id,
96% cov

AO356_10845: succinyl-CoA-glutarate CoA-transferase (EC 2.8.3.13) from Pseudomonas fluorescens

56% id,
93% cov

More...

PGA1_c12340: Predicted acyl-CoA transferases/carnitine dehydratase
is similar to:
PaperBLAST

gcdG / Q88RH1: succinyl-CoA-glutarate CoA-transferase (EC 2.8.3.13) from Pseudomonas putida

51% id,
95% cov

AO356_10845: succinyl-CoA-glutarate CoA-transferase (EC 2.8.3.13) from Pseudomonas fluorescens

51% id,
94% cov

caiB / Q7CXU0: succinate—lglutarate CoA-transferase (EC 2.8.3.13) from Agrobacterium fabrum

47% id,
93% cov

More...

PGA1_c15210: putative CoA-transferase
is similar to:
PaperBLAST

caiB / Q7CXU0: succinate—lglutarate CoA-transferase (EC 2.8.3.13) from Agrobacterium fabrum

39% id,
96% cov

AO356_10845: succinyl-CoA-glutarate CoA-transferase (EC 2.8.3.13) from Pseudomonas fluorescens

39% id,
95% cov

gcdG / Q88RH1: succinyl-CoA-glutarate CoA-transferase (EC 2.8.3.13) from Pseudomonas putida

38% id,
95% cov

More...

PGA1_c29920: alpha-methylacyl-CoA racemase
is similar to:
PaperBLAST

gcdG / Q88RH1: succinyl-CoA-glutarate CoA-transferase (EC 2.8.3.13) from Pseudomonas putida

27% id,
95% cov

PGA1_c04410: Predicted acyl-CoA transferases/carnitine dehydratase
is similar to:
PaperBLAST

AO356_10845: succinyl-CoA-glutarate CoA-transferase (EC 2.8.3.13) from Pseudomonas fluorescens

34% id,
49% cov

gcdG / Q88RH1: succinyl-CoA-glutarate CoA-transferase (EC 2.8.3.13) from Pseudomonas putida

31% id,
52% cov

SUCHY_HUMAN / Q9HAC7: Succinate--hydroxymethylglutarate CoA-transferase; Dermal papilla-derived protein 13; SuccinylCoA:glutarate-CoA transferase; EC 2.8.3.13 from Homo sapiens
SUGCT / Q9HAC7: succinyl-CoA-glutarate CoA-transferase (EC 2.8.3.13) from Homo sapiens
Q9HAC7: succinate-hydroxymethylglutarate CoA-transferase (EC 2.8.3.13) from Homo sapiens

26% id,
62% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory