Curated BLAST for Genomes

 

Curated BLAST

Searching in Phaeobacter inhibens BS107 (Phaeo)

Found 540 curated entries in PaperBLAST's database that match '3.2.1.21'.

These curated entries have 451 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Phaeobacter inhibens BS107, or try another query

PGA1_c07840: beta-glucosidase A
is similar to:
PaperBLAST

PGA1_c07840: Beta-glucosidase (EC 3.2.1.21) from Phaeobacter inhibens

100% id,
100% cov

ABC33525.1: HCH_06907 (EC 3.2.1.21)

48% id,
98% cov

ACO44852.1: Deide_00550 (EC 3.2.1.21)

48% id,
96% cov

More...

PGA1_c07890: putative alpha-glucosidase AglA
is similar to:
PaperBLAST

palQ / Q9AI62: palatinase (EC 3.2.1.219) from Erwinia rhapontici

44% id,
42% cov

palQ / Q9AI62: palatinase (EC 3.2.1.219) from Erwinia rhapontici

31% id,
34% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1982009-1983109 (frame +2) on PGA1_c
is similar to:
PaperBLAST

psu1 / RF|NP_593500.1: cell wall protein Psu1, beta-glucosidase (predicted); EC 3.2.1.21 from Schizosaccharomyces pombe

26% id,
61% cov

2159738-2160040 (frame +2) on PGA1_c
is similar to:
PaperBLAST

psu1 / RF|NP_593500.1: cell wall protein Psu1, beta-glucosidase (predicted); EC 3.2.1.21 from Schizosaccharomyces pombe

33% id,
23% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory