Curated BLAST for Genomes

 

Curated BLAST

Searching in Phaeobacter inhibens BS107 (Phaeo)

Found 8 curated entries in PaperBLAST's database that match '3.5.1.16' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Phaeobacter inhibens BS107, or try another query

PGA1_c07830: acetylornithine deacetylase ArgE
is similar to:
PaperBLAST

Q92Y75: acetylornithine deacetylase (EC 3.5.1.16) from Sinorhizobium meliloti

37% id,
99% cov

ARGE_ECOLI / P23908: Acetylornithine deacetylase; AO; Acetylornithinase; N-acetylornithinase; NAO; EC 3.5.1.16 from Escherichia coli
ArgE / b3957: acetylornithine deacetylase (EC 3.5.1.16) from Escherichia coli
argE / P23908: acetylornithine deacetylase (EC 3.5.1.16) from Escherichia coli

36% id,
92% cov

argE / Q8P8J5: acetylcitrulline deacetylase subunit (EC 3.5.1.16) from Xanthomonas campestris

30% id,
98% cov

PGA1_c10140: acetylornithine deacetylase ArgE
is similar to:
PaperBLAST

Q92Y75: acetylornithine deacetylase (EC 3.5.1.16) from Sinorhizobium meliloti

37% id,
97% cov

ARGE_ECOLI / P23908: Acetylornithine deacetylase; AO; Acetylornithinase; N-acetylornithinase; NAO; EC 3.5.1.16 from Escherichia coli
ArgE / b3957: acetylornithine deacetylase (EC 3.5.1.16) from Escherichia coli
argE / P23908: acetylornithine deacetylase (EC 3.5.1.16) from Escherichia coli

31% id,
98% cov

argE / Q8P8J5: acetylcitrulline deacetylase subunit (EC 3.5.1.16) from Xanthomonas campestris

37% id,
15% cov

More...

PGA1_c36420: succinyl-diaminopimelate desuccinylase DapE
is similar to:
PaperBLAST

Q92Y75: acetylornithine deacetylase (EC 3.5.1.16) from Sinorhizobium meliloti

28% id,
85% cov

ARGE_DICDI / P54638: Acetylornithine deacetylase; N-acetylornithinase; AO; Acetylornithinase; NAO; EC 3.5.1.16 from Dictyostelium discoideum

26% id,
77% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory