Curated BLAST for Genomes

 

Curated BLAST

Searching in Phaeobacter inhibens BS107 (Phaeo)

Found 31 curated entries in PaperBLAST's database that match '3.5.1.9' as complete word(s).

These curated entries have 22 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Phaeobacter inhibens BS107, or try another query

PGA1_c29640: Esterase/lipase
is similar to:
PaperBLAST

A0A287B5F1: arylformamidase (EC 3.5.1.9) from Sus scrofa

30% id,
87% cov

KFA_MOUSE / Q8K4H1: Kynurenine formamidase; KFA; KFase; Arylformamidase; N-formylkynurenine formamidase; FKF; EC 3.5.1.9 from Mus musculus
Afmid / Q8K4H1: arylformamidase (EC 3.5.1.9) from Mus musculus
Q8K4H1: arylformamidase (EC 3.5.1.9) from Mus musculus

29% id,
79% cov

M0RC77: arylformamidase (EC 3.5.1.9) from Rattus norvegicus

29% id,
79% cov

More...

PGA1_c13360: radical SAM domain-containing protein
is similar to:
PaperBLAST

BPHYT_RS16025: Kynurenine formamidase, bacterial (EC 3.5.1.9) from Burkholderia phytofirmans

29% id,
39% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

3099240-3100127 (frame -1) on PGA1_c
is similar to:
PaperBLAST

sibK / C0LTM5: aryl formamidase (EC 3.5.1.9) from Streptosporangium sibiricum

29% id,
95% cov

acmF / D6R242: arylformamidase (EC 3.5.1.9) from Streptomyces anulatus
Also see hits to annotated proteins above

27% id,
85% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory