Curated BLAST for Genomes

 

Curated BLAST

Searching in Phaeobacter inhibens BS107 (Phaeo)

Found 20 curated entries in PaperBLAST's database that match '3.5.3.11'.

These curated entries have 14 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Phaeobacter inhibens BS107, or try another query

PGA1_c19920: agmatinase SpeB
is similar to:
PaperBLAST

SPEB_HUMAN / Q9BSE5: Agmatinase, mitochondrial; Agmatine ureohydrolase; AUH; EC 3.5.3.11 from Homo sapiens
AGMAT / Q9BSE5: agmatinase (EC 3.5.3.11) from Homo sapiens
Q9BSE5: agmatinase (EC 3.5.3.11) from Homo sapiens

54% id,
88% cov

W5PHZ9: agmatinase (EC 3.5.3.11) from Ovis aries

55% id,
86% cov

SPEB_MOUSE / A2AS89: Agmatinase, mitochondrial; Agmatine ureohydrolase; AUH; EC 3.5.3.11 from Mus musculus

52% id,
83% cov

More...

PGA1_c19930: agmatinase SpeB
is similar to:
PaperBLAST

SPEB_PROMI / Q7X3P1: Agmatinase; Agmatine ureohydrolase; AUH; EC 3.5.3.11 from Proteus mirabilis

45% id,
94% cov

SPEB_ECOLI / P60651: Agmatinase; Agmatine ureohydrolase; AUH; EC 3.5.3.11 from Escherichia coli
SpeB / b2937: agmatinase (EC 3.5.3.11) from Escherichia coli
speB / RF|NP_417412: agmatinase; EC 3.5.3.11 from Escherichia coli
speB / P60651: agmatinase (EC 3.5.3.11) from Escherichia coli

44% id,
93% cov

SPEB_HUMAN / Q9BSE5: Agmatinase, mitochondrial; Agmatine ureohydrolase; AUH; EC 3.5.3.11 from Homo sapiens
AGMAT / Q9BSE5: agmatinase (EC 3.5.3.11) from Homo sapiens
Q9BSE5: agmatinase (EC 3.5.3.11) from Homo sapiens

40% id,
83% cov

More...

PGA1_c00310: guanidinobutyrase
is similar to:
PaperBLAST

SPEB_HUMAN / Q9BSE5: Agmatinase, mitochondrial; Agmatine ureohydrolase; AUH; EC 3.5.3.11 from Homo sapiens
AGMAT / Q9BSE5: agmatinase (EC 3.5.3.11) from Homo sapiens
Q9BSE5: agmatinase (EC 3.5.3.11) from Homo sapiens

45% id,
86% cov

W5PHZ9: agmatinase (EC 3.5.3.11) from Ovis aries

45% id,
84% cov

SPEB_PROMI / Q7X3P1: Agmatinase; Agmatine ureohydrolase; AUH; EC 3.5.3.11 from Proteus mirabilis

40% id,
93% cov

More...

PGA1_c00300: guanidinobutyrase
is similar to:
PaperBLAST

SPEB_ECOLI / P60651: Agmatinase; Agmatine ureohydrolase; AUH; EC 3.5.3.11 from Escherichia coli
SpeB / b2937: agmatinase (EC 3.5.3.11) from Escherichia coli
speB / RF|NP_417412: agmatinase; EC 3.5.3.11 from Escherichia coli
speB / P60651: agmatinase (EC 3.5.3.11) from Escherichia coli

32% id,
95% cov

W5PHZ9: agmatinase (EC 3.5.3.11) from Ovis aries

35% id,
81% cov

SPEB_PROMI / Q7X3P1: Agmatinase; Agmatine ureohydrolase; AUH; EC 3.5.3.11 from Proteus mirabilis

32% id,
88% cov

More...

PGA1_c16370: arginase ArcA
is similar to:
PaperBLAST

ARGI_MEDTR / G7JFU5: Arginase, mitochondrial; Agmatinase ARGAH; Arginine amidohydrolase; MtARGAH; EC 3.5.3.1; EC 3.5.3.11 from Medicago truncatula

30% id,
55% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

32883-33887 (frame +3) on PGA1_c
is similar to:
PaperBLAST

W5PHZ9: agmatinase (EC 3.5.3.11) from Ovis aries
Also see hits to annotated proteins above

44% id,
88% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory