Curated BLAST for Genomes

 

Curated BLAST

Searching in Phaeobacter inhibens BS107 (Phaeo)

Found 4 curated entries in PaperBLAST's database that match '3.5.99.5' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Phaeobacter inhibens BS107, or try another query

PGA1_c33270: amidase
is similar to:
PaperBLAST

CNBH_COMTE / Q38M35: 2-amino-5-chloromuconic acid deaminase; 2-aminomuconate deaminase; EC 3.5.99.5 from Comamonas testosteroni

34% id,
96% cov

PGA1_c25470: putative glutamyl-tRNA(Gln) amidotransferase subunit A
is similar to:
PaperBLAST

CNBH_COMTE / Q38M35: 2-amino-5-chloromuconic acid deaminase; 2-aminomuconate deaminase; EC 3.5.99.5 from Comamonas testosteroni

29% id,
96% cov

PGA1_c11890: putative indoleacetamide hydrolase
is similar to:
PaperBLAST

CNBH_COMTE / Q38M35: 2-amino-5-chloromuconic acid deaminase; 2-aminomuconate deaminase; EC 3.5.99.5 from Comamonas testosteroni

28% id,
97% cov

PGA1_c21970: glutamyl-tRNA(Gln) amidotransferase subunit A
is similar to:
PaperBLAST

CNBH_COMTE / Q38M35: 2-amino-5-chloromuconic acid deaminase; 2-aminomuconate deaminase; EC 3.5.99.5 from Comamonas testosteroni

32% id,
20% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory