Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Phaeobacter inhibens BS107 (Phaeo)

Found 47 curated entries in PaperBLAST's database that match '4.1.1.17' as complete word(s).

These curated entries have 35 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Phaeobacter inhibens BS107, or try another query

PGA1_c03800: putative lysine/ornithine decarboxylase is similar to:	PaperBLAST
ODC_NICGL / E0WN94: Ornithine decarboxylase, chloroplastic; EC 4.1.1.17 from Nicotiana glauca	32% id, 93% cov
DCOR1_DROME / P40807: Ornithine decarboxylase 1; ODC; EC 4.1.1.17 from Drosophila melanogaster	32% id, 90% cov
ODC1B_TOBAC / P93351: Ornithine decarboxylase 1B, chloroplastic; Nt-ODC; EC 4.1.1.17 from Nicotiana tabacum	30% id, 93% cov
ODC_NICGU / Q9FPK5: Ornithine decarboxylase, chloroplastic; Lysine decarboxylase; EC 4.1.1.17; EC 4.1.1.18 from Nicotiana glutinosa Q9FPK5: ornithine decarboxylase (EC 4.1.1.17) from Nicotiana glutinosa	31% id, 89% cov
ODC / P50134: ornithine decarboxylase (EC 4.1.1.17) from Datura stramonium	31% id, 90% cov
DCOR_SOLLC / O22616: Ornithine decarboxylase; ODC; LeODC; EC 4.1.1.17 from Solanum lycopersicum odc / O22616: ornithine decarboxylase (EC 4.1.1.17) from Solanum lycopersicum	31% id, 90% cov
ODC1A_TOBAC / A0A1S4AUX8: Ornithine decarboxylase 1A, chloroplastic; EC 4.1.1.17 from Nicotiana tabacum	31% id, 89% cov
Q54UF3: ornithine decarboxylase (EC 4.1.1.17) from Dictyostelium discoideum	31% id, 83% cov
G4XUJ8: ornithine decarboxylase (EC 4.1.1.17) from Erythroxylum coca	30% id, 87% cov
DCOR_CAEEL / P41931: Ornithine decarboxylase; ODC; EC 4.1.1.17 from Caenorhabditis elegans	27% id, 94% cov
C9W982: ornithine decarboxylase (EC 4.1.1.17) from Grateloupia imbricata	30% id, 83% cov
AN3846: ornithine decarboxylase; EC 4.1.1.17 from Emericella nidulans	30% id, 78% cov
DCOR_YEAST / P08432: Ornithine decarboxylase; ODC; EC 4.1.1.17 from Saccharomyces cerevisiae SPE1 / P08432: ornithine decarboxylase (EC 4.1.1.17) from Saccharomyces cerevisiae P08432: ornithine decarboxylase (EC 4.1.1.17) from Saccharomyces cerevisiae	27% id, 81% cov
A8J7E8: ornithine decarboxylase (EC 4.1.1.17) from Chlamydomonas reinhardtii	29% id, 74% cov
DCOR_TRYBB / P07805: Ornithine decarboxylase; ODC; EC 4.1.1.17 from Trypanosoma brucei	30% id, 71% cov
SPE1 / GB\|AAC49877.1: ornithine decarboxylase (ODC); EC 4.1.1.17 from Candida albicans	31% id, 62% cov
W5Q1G7: ornithine decarboxylase (EC 4.1.1.17) from Ovis aries	32% id, 57% cov
DCOR1_XENLA / P27120: Ornithine decarboxylase 1; ODC 1; xODC1; EC 4.1.1.17 from Xenopus laevis	31% id, 57% cov
DCOR_HUMAN / P11926: Ornithine decarboxylase; ODC; EC 4.1.1.17 from Homo sapiens ODC1 / P11926: ornithine decarboxylase subunit (EC 4.1.1.17) from Homo sapiens	31% id, 57% cov
P09057: ornithine decarboxylase (EC 4.1.1.17) from Rattus norvegicus	32% id, 54% cov
DCOR_MOUSE / P00860: Ornithine decarboxylase; ODC; EC 4.1.1.17 from Mus musculus P00860: ornithine decarboxylase (EC 4.1.1.17) from Mus musculus	31% id, 54% cov
Q58P26: ornithine decarboxylase (EC 4.1.1.17) from Entamoeba histolytica	29% id, 57% cov
A0A1E1IR91: ornithine decarboxylase (EC 4.1.1.17) from Leishmania guyanensis	31% id, 47% cov
DCOR_LEIDO / P27116: Ornithine decarboxylase; ODC; EC 4.1.1.17 from Leishmania donovani P27116: ornithine decarboxylase (EC 4.1.1.17) from Leishmania donovani	31% id, 43% cov
P90517: ornithine decarboxylase (EC 4.1.1.17) from Crithidia fasciculata	30% id, 45% cov
Q9U8D4: ornithine decarboxylase (EC 4.1.1.17); adenosylmethionine decarboxylase (EC 4.1.1.50) from Plasmodium falciparum	26% id, 15% cov
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PGA1_c11650: putative lysine/ornithine decarboxylase is similar to:	PaperBLAST
G4XUJ8: ornithine decarboxylase (EC 4.1.1.17) from Erythroxylum coca	34% id, 82% cov
ODC_NICGL / E0WN94: Ornithine decarboxylase, chloroplastic; EC 4.1.1.17 from Nicotiana glauca	35% id, 77% cov
ODC1B_TOBAC / P93351: Ornithine decarboxylase 1B, chloroplastic; Nt-ODC; EC 4.1.1.17 from Nicotiana tabacum	34% id, 78% cov
DCOR_CAEEL / P41931: Ornithine decarboxylase; ODC; EC 4.1.1.17 from Caenorhabditis elegans	31% id, 84% cov
ODC_NICGU / Q9FPK5: Ornithine decarboxylase, chloroplastic; Lysine decarboxylase; EC 4.1.1.17; EC 4.1.1.18 from Nicotiana glutinosa Q9FPK5: ornithine decarboxylase (EC 4.1.1.17) from Nicotiana glutinosa	33% id, 77% cov
ODC1A_TOBAC / A0A1S4AUX8: Ornithine decarboxylase 1A, chloroplastic; EC 4.1.1.17 from Nicotiana tabacum	33% id, 77% cov
ODC / P50134: ornithine decarboxylase (EC 4.1.1.17) from Datura stramonium	31% id, 81% cov
DCOR_SOLLC / O22616: Ornithine decarboxylase; ODC; LeODC; EC 4.1.1.17 from Solanum lycopersicum odc / O22616: ornithine decarboxylase (EC 4.1.1.17) from Solanum lycopersicum	33% id, 77% cov
C9W982: ornithine decarboxylase (EC 4.1.1.17) from Grateloupia imbricata	31% id, 80% cov
AN3846: ornithine decarboxylase; EC 4.1.1.17 from Emericella nidulans	32% id, 75% cov
DCOR_CAPAN / Q8S3N2: Ornithine decarboxylase; ODC; CaODC1; CapODC; EC 4.1.1.17 from Capsicum annuum ODC / Q8S3N2: ornithine decarboxylase (EC 4.1.1.17) from Capsicum annuum	31% id, 77% cov
DCOR1_XENLA / P27120: Ornithine decarboxylase 1; ODC 1; xODC1; EC 4.1.1.17 from Xenopus laevis	31% id, 73% cov
Q58P26: ornithine decarboxylase (EC 4.1.1.17) from Entamoeba histolytica	26% id, 83% cov
Q54UF3: ornithine decarboxylase (EC 4.1.1.17) from Dictyostelium discoideum	28% id, 72% cov
SPE1 / GB\|AAC49877.1: ornithine decarboxylase (ODC); EC 4.1.1.17 from Candida albicans	38% id, 13% cov
DCOR_YEAST / P08432: Ornithine decarboxylase; ODC; EC 4.1.1.17 from Saccharomyces cerevisiae SPE1 / P08432: ornithine decarboxylase (EC 4.1.1.17) from Saccharomyces cerevisiae P08432: ornithine decarboxylase (EC 4.1.1.17) from Saccharomyces cerevisiae	38% id, 13% cov
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PGA1_c03470: diaminopimelate decarboxylase LysA is similar to:	PaperBLAST
DCOR1_DROME / P40807: Ornithine decarboxylase 1; ODC; EC 4.1.1.17 from Drosophila melanogaster	27% id, 84% cov
AN3846: ornithine decarboxylase; EC 4.1.1.17 from Emericella nidulans	25% id, 72% cov

PGA1_c13710: diaminopimelate decarboxylase-like protein is similar to:	PaperBLAST
ODC1A_TOBAC / A0A1S4AUX8: Ornithine decarboxylase 1A, chloroplastic; EC 4.1.1.17 from Nicotiana tabacum	24% id, 88% cov
ODC_NICGL / E0WN94: Ornithine decarboxylase, chloroplastic; EC 4.1.1.17 from Nicotiana glauca	24% id, 88% cov
DCOR_SOLLC / O22616: Ornithine decarboxylase; ODC; LeODC; EC 4.1.1.17 from Solanum lycopersicum odc / O22616: ornithine decarboxylase (EC 4.1.1.17) from Solanum lycopersicum	24% id, 88% cov
ODC1B_TOBAC / P93351: Ornithine decarboxylase 1B, chloroplastic; Nt-ODC; EC 4.1.1.17 from Nicotiana tabacum	24% id, 88% cov
ODC_NICGU / Q9FPK5: Ornithine decarboxylase, chloroplastic; Lysine decarboxylase; EC 4.1.1.17; EC 4.1.1.18 from Nicotiana glutinosa Q9FPK5: ornithine decarboxylase (EC 4.1.1.17) from Nicotiana glutinosa	23% id, 88% cov
DCOR_CAPAN / Q8S3N2: Ornithine decarboxylase; ODC; CaODC1; CapODC; EC 4.1.1.17 from Capsicum annuum ODC / Q8S3N2: ornithine decarboxylase (EC 4.1.1.17) from Capsicum annuum	23% id, 87% cov
ODC / P50134: ornithine decarboxylase (EC 4.1.1.17) from Datura stramonium	23% id, 88% cov
DCOR1_XENLA / P27120: Ornithine decarboxylase 1; ODC 1; xODC1; EC 4.1.1.17 from Xenopus laevis	23% id, 80% cov
A8J7E8: ornithine decarboxylase (EC 4.1.1.17) from Chlamydomonas reinhardtii	26% id, 68% cov
DCOR_LEIDO / P27116: Ornithine decarboxylase; ODC; EC 4.1.1.17 from Leishmania donovani P27116: ornithine decarboxylase (EC 4.1.1.17) from Leishmania donovani	25% id, 37% cov
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The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

364643-365986 (frame +2) on PGA1_c is similar to:	PaperBLAST
ODC_NICGL / E0WN94: Ornithine decarboxylase, chloroplastic; EC 4.1.1.17 from Nicotiana glauca Also see hits to annotated proteins above	32% id, 97% cov
ODC1B_TOBAC / P93351: Ornithine decarboxylase 1B, chloroplastic; Nt-ODC; EC 4.1.1.17 from Nicotiana tabacum Also see hits to annotated proteins above	31% id, 97% cov
ODC_NICGU / Q9FPK5: Ornithine decarboxylase, chloroplastic; Lysine decarboxylase; EC 4.1.1.17; EC 4.1.1.18 from Nicotiana glutinosa Q9FPK5: ornithine decarboxylase (EC 4.1.1.17) from Nicotiana glutinosa Also see hits to annotated proteins above	31% id, 97% cov
ODC / P50134: ornithine decarboxylase (EC 4.1.1.17) from Datura stramonium Also see hits to annotated proteins above	31% id, 97% cov
ODC1A_TOBAC / A0A1S4AUX8: Ornithine decarboxylase 1A, chloroplastic; EC 4.1.1.17 from Nicotiana tabacum Also see hits to annotated proteins above	30% id, 97% cov
DCOR_SOLLC / O22616: Ornithine decarboxylase; ODC; LeODC; EC 4.1.1.17 from Solanum lycopersicum odc / O22616: ornithine decarboxylase (EC 4.1.1.17) from Solanum lycopersicum Also see hits to annotated proteins above	30% id, 97% cov
AN3846: ornithine decarboxylase; EC 4.1.1.17 from Emericella nidulans Also see hits to annotated proteins above	29% id, 93% cov
A8J7E8: ornithine decarboxylase (EC 4.1.1.17) from Chlamydomonas reinhardtii Also see hits to annotated proteins above	29% id, 76% cov
SPE1 / GB\|AAC49877.1: ornithine decarboxylase (ODC); EC 4.1.1.17 from Candida albicans Also see hits to annotated proteins above	30% id, 64% cov
A0A1E1IR91: ornithine decarboxylase (EC 4.1.1.17) from Leishmania guyanensis Also see hits to annotated proteins above	30% id, 53% cov
DCOR_LEIDO / P27116: Ornithine decarboxylase; ODC; EC 4.1.1.17 from Leishmania donovani P27116: ornithine decarboxylase (EC 4.1.1.17) from Leishmania donovani Also see hits to annotated proteins above	29% id, 51% cov
P90517: ornithine decarboxylase (EC 4.1.1.17) from Crithidia fasciculata Also see hits to annotated proteins above	29% id, 48% cov
More...

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory