Searching in Phaeobacter inhibens BS107 (Phaeo)
Found 53 curated entries in PaperBLAST's database that match '4.2.1.12'.
These curated entries have 33 distinct sequences.
Running ublast with E ≤ 0.01
Found 8 relevant proteins in Phaeobacter inhibens BS107, or try another query
| PGA1_c04870: tryptophan synthase beta chain is similar to: | PaperBLAST |
trpB / Q9YGB0: tryptophan synthase β subunit (EC 4.2.1.122) from Thermococcus kodakarensis | 60% id, 98% cov |
trpB1 / P50909: β subunit of tryptophan synthase (EC 4.2.1.122) from Thermotoga maritima | 58% id, 98% cov |
TrpB / b1261: tryptophan synthase subunit β (EC 4.2.1.122) from Escherichia coli | 58% id, 95% cov |
| PGA1_c28000: phosphogluconate dehydratase Edd is similar to: | PaperBLAST |
Q1PAG1: phosphogluconate dehydratase (EC 4.2.1.12) from Pseudomonas chlororaphis | 58% id, 99% cov |
EDD_ECOLI / P0ADF6: Phosphogluconate dehydratase; 6-phosphogluconate dehydratase; Entner-Doudoroff dehydrase; EC 4.2.1.12 from Escherichia coli | 55% id, 100% cov |
EDD_ZYMMO / P21909: Phosphogluconate dehydratase; 6-phosphogluconate dehydratase; EC 4.2.1.12 from Zymomonas mobilis | 55% id, 99% cov |
| PGA1_c27920: N-acetylmuramic acid 6-phosphate etherase MurQ is similar to: | PaperBLAST |
G8UQI0: N-acetylmuramic acid 6-phosphate etherase (EC 4.2.1.126) from Tannerella forsythia | 31% id, 98% cov |
P44862: N-acetylmuramic acid 6-phosphate etherase (EC 4.2.1.126) from Haemophilus influenzae | 31% id, 97% cov |
MURQ_ECOLI / P76535: N-acetylmuramic acid 6-phosphate etherase; MurNAc-6-P etherase; N-acetylmuramic acid 6-phosphate hydrolase; N-acetylmuramic acid 6-phosphate lyase; EC 4.2.1.126 from Escherichia coli | 34% id, 83% cov |
| PGA1_c07380: dihydroxy-acid dehydratase IlvD is similar to: | PaperBLAST |
EDD_ZYMMO / P21909: Phosphogluconate dehydratase; 6-phosphogluconate dehydratase; EC 4.2.1.12 from Zymomonas mobilis | 30% id, 88% cov |
Q1PAG1: phosphogluconate dehydratase (EC 4.2.1.12) from Pseudomonas chlororaphis | 32% id, 82% cov |
EDD_ECOLI / P0ADF6: Phosphogluconate dehydratase; 6-phosphogluconate dehydratase; Entner-Doudoroff dehydrase; EC 4.2.1.12 from Escherichia coli | 31% id, 83% cov |
| PGA1_c29490: dihydroxy-acid dehydratase LivD is similar to: | PaperBLAST |
EDD_ZYMMO / P21909: Phosphogluconate dehydratase; 6-phosphogluconate dehydratase; EC 4.2.1.12 from Zymomonas mobilis | 29% id, 88% cov |
EDD_ECOLI / P0ADF6: Phosphogluconate dehydratase; 6-phosphogluconate dehydratase; Entner-Doudoroff dehydrase; EC 4.2.1.12 from Escherichia coli | 30% id, 83% cov |
Q1PAG1: phosphogluconate dehydratase (EC 4.2.1.12) from Pseudomonas chlororaphis | 33% id, 50% cov |
| PGA1_c34900: threonine dehydratase biosynthetic is similar to: | PaperBLAST |
trpB1 / P50909: β subunit of tryptophan synthase (EC 4.2.1.122) from Thermotoga maritima | 27% id, 87% cov |
| PGA1_c04930: tryptophan synthase alpha chain is similar to: | PaperBLAST |
A0A2U8JPY3: tryptophan synthase (indole-salvaging) (EC 4.2.1.122); tryptophan synthase (EC 4.2.1.20) from Psilocybe cubensis | 35% id, 37% cov |
| PGA1_c27890: putative hexosephosphate binding protein is similar to: | PaperBLAST |
P44862: N-acetylmuramic acid 6-phosphate etherase (EC 4.2.1.126) from Haemophilus influenzae | 23% id, 21% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 7 reading frames. These were all redundant with annotated proteins.
Lawrence Berkeley National Laboratory