Curated BLAST for Genomes

 

Curated BLAST

Searching in Phaeobacter inhibens BS107 (Phaeo)

Found 6 curated entries in PaperBLAST's database that match '4.2.1.140' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Phaeobacter inhibens BS107, or try another query

PGA1_c04540: putative d-galactonate dehydratase
is similar to:
PaperBLAST

GAD_PICTO / Q6L1T2: D-gluconate/D-galactonate dehydratase; GAD; GNAD; EC 4.2.1.140; EC 4.2.1.39; EC 4.2.1.6 from Picrophilus torridus
Q6L1T2: gluconate/galactonate dehydratase (EC 4.2.1.140); gluconate dehydratase (EC 4.2.1.39) from Picrophilus torridus

36% id,
90% cov

GAD_SACS2 / Q97U27: D-gluconate/D-galactonate dehydratase; GAD; GNAD; EC 4.2.1.140; EC 4.2.1.39; EC 4.2.1.6 from Saccharolobus solfataricus
Q97U27: gluconate/galactonate dehydratase (EC 4.2.1.140) from Saccharolobus solfataricus

31% id,
95% cov

YidU / b4478: D-galactonate dehydratase (EC 4.2.1.140; EC 4.2.1.6) from Escherichia coli
dgoD / Q6BF17: D-galactonate dehydratase (EC 4.2.1.140) from Escherichia coli

30% id,
89% cov

More...

PGA1_262p01880: mandelate racemase/ muconate lactonizing enzyme-like protein
is similar to:
PaperBLAST

GAD_SACS2 / Q97U27: D-gluconate/D-galactonate dehydratase; GAD; GNAD; EC 4.2.1.140; EC 4.2.1.39; EC 4.2.1.6 from Saccharolobus solfataricus
Q97U27: gluconate/galactonate dehydratase (EC 4.2.1.140) from Saccharolobus solfataricus

27% id,
94% cov

GAD_PICTO / Q6L1T2: D-gluconate/D-galactonate dehydratase; GAD; GNAD; EC 4.2.1.140; EC 4.2.1.39; EC 4.2.1.6 from Picrophilus torridus
Q6L1T2: gluconate/galactonate dehydratase (EC 4.2.1.140); gluconate dehydratase (EC 4.2.1.39) from Picrophilus torridus

27% id,
89% cov

YidU / b4478: D-galactonate dehydratase (EC 4.2.1.140; EC 4.2.1.6) from Escherichia coli
dgoD / Q6BF17: D-galactonate dehydratase (EC 4.2.1.140) from Escherichia coli

25% id,
92% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory