Curated BLAST for Genomes

 

Curated BLAST

Searching in Phaeobacter inhibens BS107 (Phaeo)

Found 10 curated entries in PaperBLAST's database that match '4.2.1.44' as complete word(s).

These curated entries have 9 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Phaeobacter inhibens BS107, or try another query

PGA1_c07270: putative iolE/mocC family protein
is similar to:
PaperBLAST

PGA1_c07270: Myo-inosose-2 dehydratase (EC 4.2.1.44) from Phaeobacter inhibens

100% id,
100% cov

AO353_21340: Myo-inosose-2 dehydratase (EC 4.2.1.44) from Pseudomonas fluorescens

29% id,
97% cov

HSERO_RS12135: Myo-inosose-2 dehydratase (EC 4.2.1.44) from Herbaspirillum seropedicae

30% id,
90% cov

More...

PGA1_78p00200: Sugar phosphate isomerases/epimerases
is similar to:
PaperBLAST

HSERO_RS12135: Myo-inosose-2 dehydratase (EC 4.2.1.44) from Herbaspirillum seropedicae

27% id,
87% cov

PGA1_78p00140: Sugar phosphate isomerases/epimerases
is similar to:
PaperBLAST

PGA1_c07270: Myo-inosose-2 dehydratase (EC 4.2.1.44) from Phaeobacter inhibens

25% id,
81% cov

BPHYT_RS13920: Myo-inosose-2 dehydratase (EC 4.2.1.44) from Burkholderia phytofirmans

28% id,
50% cov

PGA1_78p00450: Sugar phosphate isomerases/epimerases
is similar to:
PaperBLAST

IOLE_BACSU / P42416: Inosose dehydratase; 2-keto-myo-inositol dehydratase; 2KMI dehydratase; EC 4.2.1.44 from Bacillus subtilis
iolE / P42416: scyllo-inosose dehydratase (EC 4.2.1.44) from Bacillus subtilis

29% id,
30% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory