Curated BLAST for Genomes

 

Curated BLAST

Searching in Phaeobacter inhibens BS107 (Phaeo)

Found 11 curated entries in PaperBLAST's database that match '4.2.1.90' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Phaeobacter inhibens BS107, or try another query

PGA1_262p01880: mandelate racemase/ muconate lactonizing enzyme-like protein
is similar to:
PaperBLAST

lra3 / Q1NEI8: L-rhamnonate dehydratase (EC 4.2.1.90) from Sphingomonas sp.

28% id,
82% cov

PGA1_c04540: putative d-galactonate dehydratase
is similar to:
PaperBLAST

RHMD_POLSJ / Q12DF1: L-rhamnonate dehydratase; RhamD; EC 4.2.1.90 from Polaromonas sp.

24% id,
85% cov

RHMD_ECOLI / P77215: L-rhamnonate dehydratase; RhamD; EC 4.2.1.90 from Escherichia coli
RhmD / b2247: L-rhamnonate dehydratase (EC 4.2.1.90) from Escherichia coli
rhmD / P77215: L-rhamnonate dehydratase (EC 4.2.1.90) from Escherichia coli
P77215: L-rhamnonate dehydratase (EC 4.2.1.90) from Escherichia coli

25% id,
83% cov

A3LZU6: L-rhamnonate dehydratase (EC 4.2.1.90) from Scheffersomyces stipitis

24% id,
84% cov

More...

PGA1_262p00220: putative mandelate racemase/muconate lactonizing enzyme
is similar to:
PaperBLAST

A3LZU6: L-rhamnonate dehydratase (EC 4.2.1.90) from Scheffersomyces stipitis

25% id,
60% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory