Curated BLAST for Genomes


Curated BLAST

Searching in Phaeobacter inhibens BS107 (Phaeo)

Found 7 curated entries in PaperBLAST's database that match ''.

These curated entries have 5 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Phaeobacter inhibens BS107, or try another query

PGA1_c16390: ornithine cyclodeaminase ArcB
is similar to:

OCD_AGRFC / P09773: Ornithine cyclodeaminase; OCD; EC from Agrobacterium fabrum
arcB / P09773: ornithine cyclodeaminase (EC from Agrobacterium fabrum

67% id,
96% cov

OCD_AGRT4 / Q59701: Ornithine cyclodeaminase; OCD; EC from Agrobacterium tumefaciens

65% id,
97% cov

OCD_PSEPK / Q88H32: Ornithine cyclodeaminase; OCD; EC from Pseudomonas putida
Q88H32: ornithine cyclodeaminase (EC from Pseudomonas putida

53% id,
97% cov


PGA1_c31650: putative ornithine cyclodeaminase/mu-crystallin family protein
is similar to:

arcB / J7SH14: ornithine cyclodeaminase subunit (EC from Clostridium sporogenes

27% id,
69% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory