Curated BLAST for Genomes

 

Curated BLAST

Searching in Phaeobacter inhibens BS107 (Phaeo)

Found 19 curated entries in PaperBLAST's database that match '4.3.2.1' as complete word(s).

These curated entries have 16 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Phaeobacter inhibens BS107, or try another query

PGA1_c03450: argininosuccinate lyase ArgH
is similar to:
PaperBLAST

Q8DVX5: argininosuccinate lyase (EC 4.3.2.1) from Streptococcus mutans

50% id,
98% cov

ArgH / b3960: argininosuccinate lyase (EC 4.3.2.1) from Escherichia coli
argH / P11447: argininosuccinate lyase (EC 4.3.2.1) from Escherichia coli

48% id,
98% cov

ARLY_NOSP7 / Q9LAE5: Argininosuccinate lyase; ASAL; ASL; Arginosuccinase; EC 4.3.2.1 from Nostoc punctiforme
Q9LAE5: argininosuccinate lyase (EC 4.3.2.1) from Nostoc sp.

47% id,
98% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

330947-332374 (frame +2) on PGA1_c
is similar to:
PaperBLAST

Q8DVX5: argininosuccinate lyase (EC 4.3.2.1) from Streptococcus mutans
Also see hits to annotated proteins above

49% id,
100% cov

Q9P870: argininosuccinate lyase (EC 4.3.2.1) from Agaricus bisporus
Also see hits to annotated proteins above

47% id,
100% cov

ARLY_NOSP7 / Q9LAE5: Argininosuccinate lyase; ASAL; ASL; Arginosuccinase; EC 4.3.2.1 from Nostoc punctiforme
Q9LAE5: argininosuccinate lyase (EC 4.3.2.1) from Nostoc sp.
Also see hits to annotated proteins above

47% id,
100% cov

More...

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory