Curated BLAST for Genomes

 

Curated BLAST

Searching in Phaeobacter inhibens BS107 (Phaeo)

Found 13 curated entries in PaperBLAST's database that match '5.1.1.4' as complete word(s).

These curated entries have 9 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Phaeobacter inhibens BS107, or try another query

PGA1_262p00280: putative proline racemase
is similar to:		 PaperBLAST

PRAC_CLODI / A8DEZ8: Proline racemase; CdPRAC; EC 5.1.1.4 from Clostridioides difficile
Q17ZY4: proline racemase (EC 5.1.1.4) from Clostridioides difficile
A8DEZ8: proline racemase (EC 5.1.1.4) from Clostridioides difficile

 33% id,
100% cov

H3ZMH5: proline racemase (EC 5.1.1.4); 4-hydroxyproline epimerase (EC 5.1.1.8) from Thermococcus litoralis

 33% id,
100% cov

B8LFE4: proline racemase (EC 5.1.1.4) from Trypanosoma vivax

 32% id,
100% cov

More...

PGA1_c05120: 4-hydroxyproline epimerase
is similar to:		 PaperBLAST

B8LFE4: proline racemase (EC 5.1.1.4) from Trypanosoma vivax

 34% id,
97% cov

H3ZMH5: proline racemase (EC 5.1.1.4); 4-hydroxyproline epimerase (EC 5.1.1.8) from Thermococcus litoralis

 32% id,
96% cov

M0LMI3: proline racemase (EC 5.1.1.4) from Haloarcula japonica

 32% id,
95% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory