Curated BLAST for Genomes

 

Curated BLAST

Searching in Phaeobacter inhibens BS107 (Phaeo)

Found 6 curated entries in PaperBLAST's database that match '5.1.1.5'.

These curated entries have 4 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Phaeobacter inhibens BS107, or try another query

PGA1_c17610: putative alanine racemase
is similar to:
PaperBLAST

LYSRA_THEMA / Q9X1T3: Lysine racemase; Lys racemase; Ornithine racemase; EC 5.1.1.5; EC 5.1.1.12 from Thermotoga maritima

35% id,
99% cov

PGA1_c17050: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
is similar to:
PaperBLAST

C7ACH5: lysine racemase (EC 5.1.1.5) from uncultured bacterium

35% id,
50% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1780631-1781698 (frame -2) on PGA1_c
is similar to:
PaperBLAST

C7ACH5: lysine racemase (EC 5.1.1.5) from uncultured bacterium
Also see hits to annotated proteins above

34% id,
55% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory