Curated BLAST for Genomes

 

Curated BLAST

Searching in Phaeobacter inhibens BS107 (Phaeo)

Found 174 curated entries in PaperBLAST's database that match '5.3.1.1'.

These curated entries have 118 distinct sequences.

Running ublast with E ≤ 0.01

Found 11 relevant proteins in Phaeobacter inhibens BS107, or try another query

PGA1_c09270: 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase HisA
is similar to:		 PaperBLAST

SMc02570: 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Sinorhizobium meliloti

 63% id,
98% cov

AZOBR_RS01680: 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Azospirillum brasilense

 63% id,
96% cov

CCNA_03852: 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Caulobacter crescentus

 60% id,
97% cov

More...

PGA1_c20650: triosephosphate isomerase TpiA
is similar to:		 PaperBLAST

TPIS_BARHE / Q8L1Z5: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Bartonella henselae
Q8L1Z5: triose-phosphate isomerase (EC 5.3.1.1) from Bartonella henselae

 54% id,
95% cov

TPIS_DEIRA / Q9RUP5: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Deinococcus radiodurans

 47% id,
99% cov

TPIS_PARBA / Q96VN5: Triosephosphate isomerase; TIM; Triose-phosphate isomerase; EC 5.3.1.1 from Paracoccidioides lutzii

 46% id,
98% cov

More...

PGA1_c36010: arabinose 5-phosphate isomerase KdsD
is similar to:		 PaperBLAST

KDSD_PSEAE / Q9HVW0: Arabinose 5-phosphate isomerase KdsD; API; Pa-KdsD; EC 5.3.1.13 from Pseudomonas aeruginosa
Q9HVW0: arabinose-5-phosphate isomerase (EC 5.3.1.13) from Pseudomonas aeruginosa

 49% id,
99% cov

KDSD_ECOLI / P45395: Arabinose 5-phosphate isomerase KdsD; API; L-API; EC 5.3.1.13 from Escherichia coli
KdsD / b3197: D-arabinose 5-phosphate isomerase KdsD (EC 5.3.1.13) from Escherichia coli
kdsD: arabinose 5-phosphate isomerase; EC 5.3.1.13 from Escherichia coli
kdsD / P45395: D-arabinose 5-phosphate isomerase KdsD (EC 5.3.1.13) from Escherichia coli

 45% id,
96% cov

A0A4Q0VE60: arabinose-5-phosphate isomerase (EC 5.3.1.13) from Clostridium tetani

 46% id,
94% cov

More...

PGA1_c19450: ABC-type sugar transport system, auxiliary component
is similar to:		 PaperBLAST

DLMIS_SERPR / D5MTT1: D-lyxose/D-mannose isomerase; EC 5.3.1.15; EC 5.3.1.7 from Serratia proteamaculans
D5MTT1: D-lyxose ketol-isomerase (EC 5.3.1.15) from Serratia proteamaculans

 44% id,
100% cov

DLMIS_ECO57 / A0A6M7H989: D-lyxose/D-mannose isomerase; EC 5.3.1.15; EC 5.3.1.7 from Escherichia coli

 42% id,
100% cov

PGA1_c17910: 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase-like protein
is similar to:		 PaperBLAST

CCNA_03852: 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Caulobacter crescentus

 42% id,
98% cov

Ga0059261_1047: 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Sphingomonas koreensis

 39% id,
98% cov

AZOBR_RS01680: 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Azospirillum brasilense

 38% id,
98% cov

More...

PGA1_c09240: imidazole glycerol phosphate synthase subunit HisF
is similar to:		 PaperBLAST

P10372: 1-(5-phosphoribosyl)-5-[(5 phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Salmonella enterica

 33% id,
98% cov

HisA / b2024: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Escherichia coli
hisA / P10371: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Escherichia coli

 31% id,
97% cov

Psest_0155: 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Pseudomonas stutzeri

 30% id,
95% cov

More...

PGA1_c17530: phosphoglycerate kinase Pgk
is similar to:		 PaperBLAST

PGKT_THEMA / P36204: Bifunctional PGK/TIM; EC 2.7.2.3; EC 5.3.1.1 from Thermotoga maritima
pgk / P36204: Pgk (EC 2.7.2.3; EC 5.3.1.1) from Thermotoga maritima
P36204: triose-phosphate isomerase (EC 5.3.1.1) from Thermotoga maritima

 48% id,
59% cov

PGA1_c19230: tRNA-dihydrouridine synthase A
is similar to:		 PaperBLAST

BT1379: 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Bacteroides thetaiotaomicron

 25% id,
95% cov

PGA1_c09070: thiazole biosynthesis protein ThiG
is similar to:		 PaperBLAST

TPIS_THETK / Q8NKN9: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Thermoproteus tenax
Q8NKN9: triose-phosphate isomerase (EC 5.3.1.1) from Thermoproteus tenax

 37% id,
33% cov

PGA1_c10230: glucosamine--fructose-6-phosphate aminotransferase GlmS
is similar to:		 PaperBLAST

A0A4Q0VE60: arabinose-5-phosphate isomerase (EC 5.3.1.13) from Clostridium tetani

 27% id,
44% cov

PGA1_c27920: N-acetylmuramic acid 6-phosphate etherase MurQ
is similar to:		 PaperBLAST

A0A4Q0VE60: arabinose-5-phosphate isomerase (EC 5.3.1.13) from Clostridium tetani

 35% id,
26% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 10 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory