Curated BLAST for Genomes


Curated BLAST

Searching in Phaeobacter inhibens BS107 (Phaeo)

Found 11 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 9 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Phaeobacter inhibens BS107, or try another query

PGA1_c07230: putative myo-inositol catabolism protein
is similar to:

PGA1_c07230: 5-deoxy-D-glucuronate isomerase (EC from Phaeobacter inhibens

100% id,
100% cov

BWI76_RS03075: 5-deoxy-D-glucuronate isomerase (EC from Klebsiella michiganensis

27% id,
86% cov

SMc00432: 5-deoxy-D-glucuronate isomerase (EC from Sinorhizobium meliloti

28% id,
82% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory