Curated BLAST for Genomes


Curated BLAST

Searching in Phaeobacter inhibens BS107 (Phaeo)

Found 23 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 20 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Phaeobacter inhibens BS107, or try another query

PGA1_c14000: xylose isomerase XylA
is similar to:

PGA1_c14000: Xylose isomerase (EC from Phaeobacter inhibens

100% id,
100% cov

SMc03163: Xylose isomerase (EC from Sinorhizobium meliloti

71% id,
100% cov

PS417_10945: Xylose isomerase (EC from Pseudomonas simiae

61% id,
99% cov


The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory