Curated BLAST for Genomes

 

Curated BLAST

Searching in Phaeobacter inhibens BS107 (Phaeo)

Found 18 curated entries in PaperBLAST's database that match '5.4.2.7'.

These curated entries have 12 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Phaeobacter inhibens BS107, or try another query

PGA1_c11950: phosphopentomutase DeoB
is similar to:
PaperBLAST

Dshi_0829: Phosphopentomutase (EC 5.4.2.7) from Dinoroseobacter shibae

65% id,
100% cov

Tlr / b4383: phosphopentomutase (EC 5.4.2.7) from Escherichia coli
deoB / RF|NP_418800: phosphopentomutase; EC 5.4.2.7 from Escherichia coli
deoB: phosphopentomutase; EC 5.4.2.7 from Escherichia coli
deoB / P0A6K6: phosphopentomutase (EC 5.4.2.7) from Escherichia coli
P0A6K6: phosphopentomutase (EC 5.4.2.7) from Escherichia coli

49% id,
98% cov

SO1219: Phosphopentomutase (EC 5.4.2.7) from Shewanella oneidensis

49% id,
99% cov

More...

PGA1_c06550: phosphoglucosamine mutase GlmM
is similar to:
PaperBLAST

PPM_THEKO / Q6I7B6: Phosphopentomutase; PPM; EC 5.4.2.7 from Thermococcus kodakarensis
Q6I7B6: phosphopentomutase (EC 5.4.2.7) from Thermococcus kodakarensis

29% id,
99% cov

PGM3_SCHPO / O74478: Probable phosphoribomutase; PRM; Phosphoglucomutase 3 homolog; PGM 3 homolog; EC 5.4.2.7 from Schizosaccharomyces pombe

22% id,
72% cov

PGM2_MOUSE / Q7TSV4: Phosphoglucomutase-2; PGM 2; Glucose phosphomutase 2; Phosphodeoxyribomutase; Phosphoglucomutase-1; Phosphopentomutase; EC 5.4.2.2; EC 5.4.2.7 from Mus musculus

28% id,
25% cov

More...

PGA1_c24340: phosphomannomutase/phosphoglucomutase AlgC
is similar to:
PaperBLAST

PPM_THEKO / Q6I7B6: Phosphopentomutase; PPM; EC 5.4.2.7 from Thermococcus kodakarensis
Q6I7B6: phosphopentomutase (EC 5.4.2.7) from Thermococcus kodakarensis

29% id,
92% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory