Curated BLAST for Genomes

 

Curated BLAST

Searching in Phaeobacter inhibens BS107 (Phaeo)

Found 8 curated entries in PaperBLAST's database that match '5.5.1.1' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Phaeobacter inhibens BS107, or try another query

PGA1_c04540: putative d-galactonate dehydratase
is similar to:
PaperBLAST

C6YXG6: Muconate cycloisomerase (EC 5.5.1.1) from Pseudomonas reinekei

26% id,
95% cov

PS417_23670: Muconate cycloisomerase (EC 5.5.1.1) from Pseudomonas simiae

25% id,
88% cov

catB / A0F0B3: muconate cycloisomerase (EC 5.5.1.1) from Pseudomonas reinekei

23% id,
87% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory