Curated BLAST for Genomes

 

Curated BLAST

Searching in Phaeobacter inhibens BS107 (Phaeo)

Found 10 curated entries in PaperBLAST's database that match '6.2.1.16'.

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 18 relevant proteins in Phaeobacter inhibens BS107, or try another query

PGA1_c11990: acyl-CoA synthetase
is similar to:
PaperBLAST

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

29% id,
97% cov

PGA1_c23440: putative benzoate-CoA ligase
is similar to:
PaperBLAST

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

31% id,
91% cov

PGA1_262p01840: ATP-dependent AMP binding enzyme
is similar to:
PaperBLAST

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

31% id,
91% cov

PGA1_c12950: acetyl-coenzyme A synthetase Acs
is similar to:
PaperBLAST

D6EQU8: acetoacetate-CoA ligase (EC 6.2.1.16) from Streptomyces lividans

26% id,
98% cov

AACS_HUMAN / Q86V21: Acetoacetyl-CoA synthetase; Acyl-CoA synthetase family member 1; Protein sur-5 homolog; EC 6.2.1.16 from Homo sapiens
Q86V21: acetoacetate-CoA ligase (EC 6.2.1.16) from Homo sapiens

25% id,
95% cov

SUR5_CAEEL / Q21166: Acetoacetyl-CoA synthetase; Suppressor of activated let-60 Ras protein 5; EC 6.2.1.16 from Caenorhabditis elegans

23% id,
89% cov

More...

PGA1_c35550: medium-chain-fatty-acid--CoA ligase AlkK
is similar to:
PaperBLAST

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

26% id,
94% cov

PGA1_c22760: medium-chain-fatty-acid--CoA ligase AlkK
is similar to:
PaperBLAST

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

27% id,
89% cov

PGA1_c11900: propionate-CoA ligase PrpE
is similar to:
PaperBLAST

D6EQU8: acetoacetate-CoA ligase (EC 6.2.1.16) from Streptomyces lividans

26% id,
91% cov

Q9D2R0: acetoacetate-CoA ligase (EC 6.2.1.16) from Mus musculus

24% id,
92% cov

AACS_RAT / Q9JMI1: Acetoacetyl-CoA synthetase; EC 6.2.1.16 from Rattus norvegicus

23% id,
92% cov

More...

PGA1_c34070: long-chain-fatty-acid- CoA ligase IcfB
is similar to:
PaperBLAST

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

34% id,
62% cov

PGA1_c25300: long-chain-fatty-acid--CoA ligase FadD
is similar to:
PaperBLAST

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

33% id,
65% cov

PGA1_c02630: putative long-chain-fatty-acid-CoA ligase
is similar to:
PaperBLAST

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

25% id,
81% cov

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

36% id,
30% cov

PGA1_c22180: long-chain-fatty-acid--CoA ligase FadD
is similar to:
PaperBLAST

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

32% id,
60% cov

PGA1_c13740: long-chain-fatty-acid- CoA ligase IcfB
is similar to:
PaperBLAST

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

27% id,
70% cov

PGA1_c04160: putative crotonobetaine/carnitine-CoA ligase
is similar to:
PaperBLAST

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

29% id,
65% cov

SUR5_CAEEL / Q21166: Acetoacetyl-CoA synthetase; Suppressor of activated let-60 Ras protein 5; EC 6.2.1.16 from Caenorhabditis elegans

34% id,
8% cov

PGA1_c10300: acetyl-coenzyme A synthetase AcsA
is similar to:
PaperBLAST

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

30% id,
60% cov

PGA1_c13780: D-alanine--poly(phosphoribitol) ligase subunit
is similar to:
PaperBLAST

Q9D2R0: acetoacetate-CoA ligase (EC 6.2.1.16) from Mus musculus

25% id,
54% cov

AACS_RAT / Q9JMI1: Acetoacetyl-CoA synthetase; EC 6.2.1.16 from Rattus norvegicus

25% id,
54% cov

PGA1_c32630: putative long-chain-fatty-acid--CoA ligase
is similar to:
PaperBLAST

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

23% id,
52% cov

PGA1_c05350: dimodular nonribosomal peptide synthetase
is similar to:
PaperBLAST

AACS_RHIME / Q9Z3R3: Acetoacetyl-coenzyme A synthetase; Acetoacetyl-CoA synthetase; EC 6.2.1.16 from Rhizobium meliloti
SMc00774: Acetoacetate--CoA ligase (EC 6.2.1.16) from Sinorhizobium meliloti
Q9Z3R3: acetoacetate-CoA ligase (EC 6.2.1.16) from Sinorhizobium meliloti

25% id,
30% cov

PGA1_c14950: putative long-chain-fatty-acid-CoA ligase
is similar to:
PaperBLAST

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

38% id,
11% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 17 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory