Curated BLAST for Genomes

 

Curated BLAST

Searching in Phaeobacter inhibens BS107 (Phaeo)

Found 13 curated entries in PaperBLAST's database that match '6.2.1.30' as complete word(s).

These curated entries have 9 distinct sequences.

Running ublast with E ≤ 0.01

Found 16 relevant proteins in Phaeobacter inhibens BS107, or try another query

PGA1_c26800: phenylacetate-CoA ligase PaaK
is similar to:
PaperBLAST

PAAK_AROEV / Q9L9C1: Phenylacetate-coenzyme A ligase; Phenylacetyl-CoA ligase; PA-CoA ligase; EC 6.2.1.30 from Aromatoleum evansii
paaK / Q9L9C1: phenylacetate-CoA ligase (aerobic) (EC 6.2.1.30) from Aromatoleum evansii

69% id,
99% cov

B4E7B5: phenylacetate-CoA ligase (EC 6.2.1.30) from Burkholderia cenocepacia

68% id,
98% cov

B4EL89: phenylacetate-CoA ligase (EC 6.2.1.30) from Burkholderia cenocepacia

67% id,
97% cov

More...

PGA1_c34070: long-chain-fatty-acid- CoA ligase IcfB
is similar to:
PaperBLAST

A7KUK6: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

31% id,
86% cov

phl / O74725: phenylacetyl-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum
O74725: medium-chain acyl-CoA ligase (EC 6.2.1.2); phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

30% id,
85% cov

D3GE78: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

31% id,
64% cov

PGA1_c13740: long-chain-fatty-acid- CoA ligase IcfB
is similar to:
PaperBLAST

D3GE78: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

29% id,
91% cov

A7KUK6: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

26% id,
95% cov

PGA1_c32550: phenylacetate-CoA ligase PaaK
is similar to:
PaperBLAST

PAAK_ECOLI / P76085: Phenylacetate-coenzyme A ligase; Phenylacetyl-CoA ligase; PA-CoA ligase; EC 6.2.1.30 from Escherichia coli
PaaK / b1398: phenylacetate-CoA ligase (EC 6.2.1.30) from Escherichia coli

30% id,
86% cov

PAAK_THET2 / Q72K16: Phenylacetate-coenzyme A ligase; Phenylacetyl-CoA ligase; PA-CoA ligase; EC 6.2.1.30 from Thermus thermophilus
Q72K16: phenylacetate-CoA ligase (EC 6.2.1.30) from Thermus thermophilus

28% id,
88% cov

PGA1_262p01840: ATP-dependent AMP binding enzyme
is similar to:
PaperBLAST

D3GE78: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

27% id,
96% cov

phl / O74725: phenylacetyl-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum
O74725: medium-chain acyl-CoA ligase (EC 6.2.1.2); phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

26% id,
89% cov

A7KUK6: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

26% id,
44% cov

PGA1_c04160: putative crotonobetaine/carnitine-CoA ligase
is similar to:
PaperBLAST

A7KUK6: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

27% id,
96% cov

phl / O74725: phenylacetyl-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum
O74725: medium-chain acyl-CoA ligase (EC 6.2.1.2); phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

27% id,
92% cov

D3GE78: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

27% id,
91% cov

PGA1_c35550: medium-chain-fatty-acid--CoA ligase AlkK
is similar to:
PaperBLAST

D3GE78: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

27% id,
92% cov

phl / O74725: phenylacetyl-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum
O74725: medium-chain acyl-CoA ligase (EC 6.2.1.2); phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

24% id,
88% cov

A7KUK6: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

23% id,
83% cov

PGA1_c22760: medium-chain-fatty-acid--CoA ligase AlkK
is similar to:
PaperBLAST

phl / O74725: phenylacetyl-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum
O74725: medium-chain acyl-CoA ligase (EC 6.2.1.2); phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

26% id,
88% cov

D3GE78: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

23% id,
88% cov

A7KUK6: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

28% id,
65% cov

PGA1_c25300: long-chain-fatty-acid--CoA ligase FadD
is similar to:
PaperBLAST

phl / O74725: phenylacetyl-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum
O74725: medium-chain acyl-CoA ligase (EC 6.2.1.2); phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

31% id,
62% cov

PGA1_78p00430: putative AMP-dependent synthetase and ligase
is similar to:
PaperBLAST

PAAK_THET2 / Q72K16: Phenylacetate-coenzyme A ligase; Phenylacetyl-CoA ligase; PA-CoA ligase; EC 6.2.1.30 from Thermus thermophilus
Q72K16: phenylacetate-CoA ligase (EC 6.2.1.30) from Thermus thermophilus

25% id,
72% cov

A7KUK6: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

22% id,
65% cov

B4EL89: phenylacetate-CoA ligase (EC 6.2.1.30) from Burkholderia cenocepacia

28% id,
26% cov

PGA1_c28490: putative nonribosomal peptide synthetase
is similar to:
PaperBLAST

phl / O74725: phenylacetyl-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum
O74725: medium-chain acyl-CoA ligase (EC 6.2.1.2); phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

25% id,
67% cov

PGA1_c12950: acetyl-coenzyme A synthetase Acs
is similar to:
PaperBLAST

A7KUK6: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

26% id,
55% cov

PGA1_c11990: acyl-CoA synthetase
is similar to:
PaperBLAST

D3GE78: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

30% id,
45% cov

A7KUK6: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

28% id,
47% cov

D3GE78: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

28% id,
36% cov

PGA1_c02630: putative long-chain-fatty-acid-CoA ligase
is similar to:
PaperBLAST

D3GE78: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

25% id,
50% cov

D3GE78: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

33% id,
35% cov

A7KUK6: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

36% id,
30% cov

More...

PGA1_c32630: putative long-chain-fatty-acid--CoA ligase
is similar to:
PaperBLAST

A7KUK6: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

26% id,
34% cov

D3GE78: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

24% id,
35% cov

phl / O74725: phenylacetyl-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum
O74725: medium-chain acyl-CoA ligase (EC 6.2.1.2); phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

33% id,
11% cov

PGA1_c05350: dimodular nonribosomal peptide synthetase
is similar to:
PaperBLAST

A7KUK6: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

38% id,
15% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 15 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

2359473-2361104 (frame -1) on PGA1_c
is similar to:
PaperBLAST

phl / O74725: phenylacetyl-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum
O74725: medium-chain acyl-CoA ligase (EC 6.2.1.2); phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum
Also see hits to annotated proteins above

25% id,
97% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory