Curated BLAST for Genomes

 

Curated BLAST

Searching in Phaeobacter inhibens BS107 (Phaeo)

Found 1 curated entries in PaperBLAST's database that match '2,4-diketo-3-deoxy-L-rhamnonate hydrolase' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Phaeobacter inhibens BS107, or try another query

PGA1_c04530: ureidoglycolate lyase
is similar to:
PaperBLAST

BPHYT_RS34210: 2,4-diketo-3-deoxy-L-rhamnonate hydrolase (EC 3.7.1.-) from Burkholderia phytofirmans

59% id,
98% cov

PGA1_c33930: fumarylacetoacetate hydrolase family protein
is similar to:
PaperBLAST

BPHYT_RS34210: 2,4-diketo-3-deoxy-L-rhamnonate hydrolase (EC 3.7.1.-) from Burkholderia phytofirmans

32% id,
79% cov

PGA1_c32200: fumarylacetoacetate hydrolase family protein
is similar to:
PaperBLAST

BPHYT_RS34210: 2,4-diketo-3-deoxy-L-rhamnonate hydrolase (EC 3.7.1.-) from Burkholderia phytofirmans

32% id,
71% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory