Curated BLAST for Genomes

 

Curated BLAST

Searching in Phaeobacter inhibens BS107 (Phaeo)

Found 6 curated entries in PaperBLAST's database that match 'D-alanine%dehydrogenase' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Phaeobacter inhibens BS107, or try another query

PGA1_c05140: D-amino acid dehydrogenase small subunit
is similar to:
PaperBLAST

DADA_KLEAE / O30745: D-amino acid dehydrogenase; D-alanine dehydrogenase; EC 1.4.99.- from Klebsiella aerogenes

27% id,
96% cov

PGA1_c08750: sarcosine oxidase subunit beta
is similar to:
PaperBLAST

DADA_ECOLI / P0A6J5: D-amino acid dehydrogenase; D-alanine dehydrogenase; EC 1.4.99.- from Escherichia coli

24% id,
74% cov

DADA_KLEAE / O30745: D-amino acid dehydrogenase; D-alanine dehydrogenase; EC 1.4.99.- from Klebsiella aerogenes

24% id,
69% cov

Psest_3793: D-alanine dehydrogenase (EC 1.4.99.-) from Pseudomonas stutzeri

25% id,
66% cov

More...

PGA1_c23300: putative sarcosine dehydrogenase
is similar to:
PaperBLAST

AZOBR_RS08020: D-alanine dehydrogenase (EC 1.4.99.-) from Azospirillum brasilense

22% id,
47% cov

PGA1_c19170: sarcosine oxidase subunit beta
is similar to:
PaperBLAST

Ac3H11_4848: D-alanine dehydrogenase (EC 1.4.99.-) from Acidovorax sp.

37% id,
17% cov

PGA1_c28230: dimethylglycine dehydrogenase DmgdH
is similar to:
PaperBLAST

Psest_3793: D-alanine dehydrogenase (EC 1.4.99.-) from Pseudomonas stutzeri

33% id,
16% cov

DADA1_PSEAE / Q9HTQ0: D-amino acid dehydrogenase 1; D-alanine dehydrogenase 1; EC 1.4.99.- from Pseudomonas aeruginosa

32% id,
16% cov

PGA1_c25320: Phytoene dehydrogenase and related proteins
is similar to:
PaperBLAST

AZOBR_RS08020: D-alanine dehydrogenase (EC 1.4.99.-) from Azospirillum brasilense

38% id,
13% cov

PGA1_c14880: putative 3-hydroxyisobutyrate dehydrogenase
is similar to:
PaperBLAST

DADA_KLEAE / O30745: D-amino acid dehydrogenase; D-alanine dehydrogenase; EC 1.4.99.- from Klebsiella aerogenes

39% id,
13% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory