Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Phaeobacter inhibens BS107 (Phaeo)

Found 21 curated entries in PaperBLAST's database that match 'Glycine cleavage system H' as complete word(s).

These curated entries have 17 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Phaeobacter inhibens BS107, or try another query

PGA1_c05560: glycine cleavage system protein GcvH is similar to:	PaperBLAST
GCSH_ECOLI / P0A6T9: Glycine cleavage system H protein from Escherichia coli Gcv / b2904: glycine cleavage system H protein from Escherichia coli gcvH / P0A6T9: glycine cleavage system H protein from Escherichia coli	53% id, 92% cov
GCSH_THET8 / Q5SKW9: Glycine cleavage system H protein from Thermus thermophilus	52% id, 91% cov
GCSH_STAAM / P64213: Glycine cleavage system H protein; Octanoyl/lipoyl carrier protein from Staphylococcus aureus	43% id, 94% cov
GCSH_BACSU / O32174: Glycine cleavage system H protein; Octanoyl/lipoyl carrier protein from Bacillus subtilis	42% id, 92% cov
GCSH_CHICK / P11183: Glycine cleavage system H protein, mitochondrial; Lipoic acid-containing protein from Gallus gallus	48% id, 71% cov
GCSH_FLATR / P46485: Glycine cleavage system H protein, mitochondrial; Lipoyl-bearing H protein from Flaveria trinervia	48% id, 71% cov
GCSH_ORYSJ / A3C6G9: Glycine cleavage system H protein, mitochondrial from Oryza sativa	48% id, 70% cov
GCSH_HUMAN / P23434: Glycine cleavage system H protein, mitochondrial; Lipoic acid-containing protein from Homo sapiens GCSH / P23434: glycine cleavage system H protein, mitochondrial (EC 1.4.1.27) from Homo sapiens	48% id, 68% cov
GCSH1_ARATH / P25855: Glycine cleavage system H protein 1, mitochondrial from Arabidopsis thaliana GDH1 / P25855: glycine cleavage system H protein 1 (EC 1.4.1.27) from Arabidopsis thaliana	46% id, 71% cov
gcvH / P73560: glycine cleavage system H-protein (EC 1.4.1.27) from Synechocystis sp.	37% id, 86% cov
GCSH / A8HYD5: glycine cleavage system H protein (EC 1.4.1.27) from Chlamydomonas reinhardtii	45% id, 71% cov
GCSH_BOVIN / P20821: Glycine cleavage system H protein, mitochondrial; Lipoic acid-containing protein from Bos taurus	47% id, 68% cov
GCSH_SCHPO / Q9HDV9: Putative glycine cleavage system H protein, mitochondrial; Glycine decarboxylase complex subunit H from Schizosaccharomyces pombe	46% id, 68% cov
GCSH3_ARATH / Q9LQL0: Glycine cleavage system H protein 3, mitochondrial from Arabidopsis thaliana	44% id, 70% cov
GCSH_YEAST / P39726: Glycine cleavage system H protein, mitochondrial; Glycine decarboxylase complex subunit H from Saccharomyces cerevisiae	49% id, 58% cov
GCVHL_STRPG / P0DN69: Glycine cleavage system H-like protein; GcvH-L from Streptococcus pyogenes	27% id, 92% cov
More...

PGA1_78p00300: glycine cleavage system protein GcvH is similar to:	PaperBLAST
GCSH_ECOLI / P0A6T9: Glycine cleavage system H protein from Escherichia coli Gcv / b2904: glycine cleavage system H protein from Escherichia coli gcvH / P0A6T9: glycine cleavage system H protein from Escherichia coli	50% id, 91% cov
GCSH_STAAM / P64213: Glycine cleavage system H protein; Octanoyl/lipoyl carrier protein from Staphylococcus aureus	46% id, 93% cov
GCSH_THET8 / Q5SKW9: Glycine cleavage system H protein from Thermus thermophilus	46% id, 91% cov
GCSH_BACSU / O32174: Glycine cleavage system H protein; Octanoyl/lipoyl carrier protein from Bacillus subtilis	44% id, 91% cov
gcvH / P73560: glycine cleavage system H-protein (EC 1.4.1.27) from Synechocystis sp.	40% id, 90% cov
GCSH / A8HYD5: glycine cleavage system H protein (EC 1.4.1.27) from Chlamydomonas reinhardtii	48% id, 70% cov
GCSH_YEAST / P39726: Glycine cleavage system H protein, mitochondrial; Glycine decarboxylase complex subunit H from Saccharomyces cerevisiae	47% id, 71% cov
GCSH1_ARATH / P25855: Glycine cleavage system H protein 1, mitochondrial from Arabidopsis thaliana GDH1 / P25855: glycine cleavage system H protein 1 (EC 1.4.1.27) from Arabidopsis thaliana	46% id, 68% cov
GCSH3_ARATH / Q9LQL0: Glycine cleavage system H protein 3, mitochondrial from Arabidopsis thaliana	46% id, 67% cov
GCSH_SCHPO / Q9HDV9: Putative glycine cleavage system H protein, mitochondrial; Glycine decarboxylase complex subunit H from Schizosaccharomyces pombe	44% id, 68% cov
GCSH_ORYSJ / A3C6G9: Glycine cleavage system H protein, mitochondrial from Oryza sativa	44% id, 68% cov
GCSH_FLATR / P46485: Glycine cleavage system H protein, mitochondrial; Lipoyl-bearing H protein from Flaveria trinervia	44% id, 68% cov
GCSH_CHICK / P11183: Glycine cleavage system H protein, mitochondrial; Lipoic acid-containing protein from Gallus gallus	41% id, 71% cov
GCSH_HUMAN / P23434: Glycine cleavage system H protein, mitochondrial; Lipoic acid-containing protein from Homo sapiens GCSH / P23434: glycine cleavage system H protein, mitochondrial (EC 1.4.1.27) from Homo sapiens	41% id, 67% cov
GCSH_BOVIN / P20821: Glycine cleavage system H protein, mitochondrial; Lipoic acid-containing protein from Bos taurus	40% id, 67% cov
More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory