Curated BLAST for Genomes

 

Curated BLAST

Searching in Phaeobacter inhibens BS107 (Phaeo)

Found 60 curated entries in PaperBLAST's database that match 'Serine hydroxymethyltransferase' as complete word(s).

These curated entries have 48 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Phaeobacter inhibens BS107, or try another query

PGA1_c11870: serine hydroxymethyltransferase GlyA
is similar to:
PaperBLAST

glyA / P34895: serine hydroxymethyltransferase subunit (EC 2.1.2.1) from Hyphomicrobium methylovorum

74% id,
98% cov

GLYA2_BURP1 / Q3JGP5: Serine hydroxymethyltransferase 2; SHMT 2; Serine methylase 2; EC 2.1.2.1 from Burkholderia pseudomallei

68% id,
99% cov

4n0wA / B4ECY9: X-ray crystal structure of a serine hydroxymethyltransferase from burkholderia cenocepacia with covalently attached pyridoxal phosphate

66% id,
98% cov

More...

PGA1_c24580: putative serine hydroxymethyltransferase
is similar to:
PaperBLAST

GLYA_SACS2 / Q9UWT5: Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.- from Saccharolobus solfataricus

33% id,
93% cov

GLYA_METJA / Q58992: Serine hydroxymethyltransferase; SHMT; Serine methylase; L-allo-threonine aldolase; EC 2.1.2.-; EC 4.1.2.49 from Methanocaldococcus jannaschii

33% id,
93% cov

GLYA_METTH / O27433: Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.- from Methanothermobacter thermautotrophicus

33% id,
92% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory