Curated BLAST for Genomes

 

Curated BLAST

Searching in Phaeobacter inhibens BS107 (Phaeo)

Found 28 curated entries in PaperBLAST's database that match 'cystathionine gamma-lyase' as complete word(s).

These curated entries have 25 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Phaeobacter inhibens BS107, or try another query

PGA1_c16600: methionine gamma-lyase MdeA
is similar to:
PaperBLAST

A2RM21: cystathionine gamma-lyase (EC 4.4.1.1); cysteine-S-conjugate beta-lyase (EC 4.4.1.13) from Lactococcus lactis

44% id,
99% cov

Q5H4T8: cystathionine gamma-lyase (EC 4.4.1.1) from Xanthomonas oryzae

44% id,
96% cov

6k1lA / B4SII9: E53a mutant of a putative cystathionine gamma-lyase

43% id,
99% cov

More...

PGA1_c23540: O-succinylhomoserine sulfhydrylase MetZ
is similar to:
PaperBLAST

7ba4A / A0A509J8D5: Structure of cystathionine gamma-lyase from pseudomonas aeruginosa

41% id,
99% cov

6k1lA / B4SII9: E53a mutant of a putative cystathionine gamma-lyase

39% id,
98% cov

Q5H4T8: cystathionine gamma-lyase (EC 4.4.1.1) from Xanthomonas oryzae

40% id,
95% cov

More...

PGA1_c07640: O-acetylhomoserine / O-acetylserine sulfhydrylase
is similar to:
PaperBLAST

metB / P56069: cystathionine gamma-lyase (EC 4.4.1.1) from Helicobacter pylori

36% id,
99% cov

7d7oB / Q818A3: Crystal structure of cystathionine gamma-lyase from bacillus cereus atcc 14579

33% id,
99% cov

6k1lA / B4SII9: E53a mutant of a putative cystathionine gamma-lyase

33% id,
98% cov

More...

PGA1_c13950: cysteine synthase CysK
is similar to:
PaperBLAST

CGL_ARATH / F4K5T2: Bifunctional cystathionine gamma-lyase/cysteine synthase; Beta-substituted Ala synthase 4;3; ARAth-Bsas4;3; L-cysteine desulfhydrase 1; DES1; O-acetylserine (thiol)-lyase; OASTL; Protein CS-LIKE; EC 2.5.1.47; EC 4.4.1.1 from Arabidopsis thaliana

37% id,
98% cov

PGA1_c15810: pyridoxal phosphate-dependent enzyme, cysteine / methionine metabolism
is similar to:
PaperBLAST

7ba4A / A0A509J8D5: Structure of cystathionine gamma-lyase from pseudomonas aeruginosa

37% id,
96% cov

MCCB_BACSU / O05394: Cystathionine gamma-lyase; Gamma-cystathionase; Homocysteine gamma-lyase; EC 4.4.1.1; EC 4.4.1.2 from Bacillus subtilis

38% id,
90% cov

6k1lA / B4SII9: E53a mutant of a putative cystathionine gamma-lyase

36% id,
96% cov

More...

PGA1_c16720: putative pyridoxal phosphate-dependent transferase
is similar to:
PaperBLAST

6k1lA / B4SII9: E53a mutant of a putative cystathionine gamma-lyase

34% id,
100% cov

A2RM21: cystathionine gamma-lyase (EC 4.4.1.1); cysteine-S-conjugate beta-lyase (EC 4.4.1.13) from Lactococcus lactis

35% id,
94% cov

B3TNN8: cystathionine gamma-lyase (subunit 2/2) (EC 4.4.1.1); cysteine-S-conjugate beta-lyase (EC 4.4.1.13) from Lacticaseibacillus casei

35% id,
94% cov

More...

PGA1_c19510: cys/met metabolism PLP-dependent enzyme
is similar to:
PaperBLAST

metB / P56069: cystathionine gamma-lyase (EC 4.4.1.1) from Helicobacter pylori

35% id,
96% cov

A2RM21: cystathionine gamma-lyase (EC 4.4.1.1); cysteine-S-conjugate beta-lyase (EC 4.4.1.13) from Lactococcus lactis

35% id,
96% cov

MCCB_BACSU / O05394: Cystathionine gamma-lyase; Gamma-cystathionase; Homocysteine gamma-lyase; EC 4.4.1.1; EC 4.4.1.2 from Bacillus subtilis

34% id,
96% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1442903-1444003 (frame +2) on PGA1_c
is similar to:
PaperBLAST

CGL_ARATH / F4K5T2: Bifunctional cystathionine gamma-lyase/cysteine synthase; Beta-substituted Ala synthase 4;3; ARAth-Bsas4;3; L-cysteine desulfhydrase 1; DES1; O-acetylserine (thiol)-lyase; OASTL; Protein CS-LIKE; EC 2.5.1.47; EC 4.4.1.1 from Arabidopsis thaliana
Also see hits to annotated proteins above

36% id,
99% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory