Curated BLAST for Genomes


Curated BLAST

Searching in Phaeobacter inhibens BS107 (Phaeo)

Found 6 curated entries in PaperBLAST's database that match 'deoxy%ribonate transporter' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Phaeobacter inhibens BS107, or try another query

PGA1_c31490: transporter, MFS family
is similar to:

H281DRAFT_00642: 2-deoxy-D-ribonate transporter from Paraburkholderia bryophila

28% id,
42% cov

PS417_07265: 2-deoxy-D-ribonate transporter 1 from Pseudomonas simiae

28% id,
41% cov

BWI76_RS23715: 2-deoxy-D-ribonate transporter 1 from Klebsiella michiganensis

26% id,
41% cov


The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory