Curated BLAST for Genomes

 

Curated BLAST

Searching in Phaeobacter inhibens BS107 (Phaeo)

Found 3 curated entries in PaperBLAST's database that match 'glutamyl-tRNA(Gln) amidotransferase subunit C' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Phaeobacter inhibens BS107, or try another query

PGA1_c21980: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C
is similar to:
PaperBLAST

GATC_HUMAN / O43716: Glutamyl-tRNA(Gln) amidotransferase subunit C, mitochondrial; Glu-AdT subunit C; Protein 15E1.2; EC 6.3.5.- from Homo sapiens

33% id,
63% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

2279492-2279794 (frame -2) on PGA1_c
is similar to:
PaperBLAST

GATC_STRP6 / Q5XAC6: Glutamyl-tRNA(Gln) amidotransferase subunit C; Glu-ADT subunit C; EC 6.3.5.- from Streptococcus pyogenes

28% id,
95% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory