Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas putida KT2440 (Putida)

Found 2 curated entries in PaperBLAST's database that match '1.1.1.255' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pseudomonas putida KT2440, or try another query

PP_2426: coniferyl alcohol dehydrogenase
is similar to:
PaperBLAST

MTD / Q38707: mannitol dehydrogenase (EC 1.1.1.255) from Apium graveolens
Q38707: mannitol dehydrogenase (EC 1.1.1.255) from Apium graveolens

48% id,
94% cov

PP_3839: short-chain alcohol dehydrogenase
is similar to:
PaperBLAST

MTD / Q38707: mannitol dehydrogenase (EC 1.1.1.255) from Apium graveolens
Q38707: mannitol dehydrogenase (EC 1.1.1.255) from Apium graveolens

30% id,
88% cov

PP_3970: putative oxidoreductase, Zn-dependent and NAD(P)-binding
is similar to:
PaperBLAST

MTD / Q38707: mannitol dehydrogenase (EC 1.1.1.255) from Apium graveolens
Q38707: mannitol dehydrogenase (EC 1.1.1.255) from Apium graveolens

36% id,
24% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory