Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas putida KT2440 (Putida)

Found 64 curated entries in PaperBLAST's database that match '1.1.1.27' as complete word(s).

These curated entries have 50 distinct sequences.

Running ublast with E ≤ 0.01

Found 8 relevant proteins in Pseudomonas putida KT2440, or try another query

PP_0654: putative malate dehydrogenase
is similar to:
PaperBLAST

Q27797: L-lactate dehydrogenase (EC 1.1.1.27) from Toxoplasma gondii

37% id,
97% cov

Q9GT92: L-lactate dehydrogenase (EC 1.1.1.27) from Cryptosporidium parvum

38% id,
94% cov

LDH_THEMA / P16115: L-lactate dehydrogenase; L-LDH; EC 1.1.1.27 from Thermotoga maritima

36% id,
97% cov

More...

PP_2803: 1,3-propanediol dehydrogenase
is similar to:
PaperBLAST

I3VSF1: alcohol dehydrogenase (EC 1.1.1.1); L-lactate dehydrogenase (EC 1.1.1.27); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacterium saccharolyticum

35% id,
47% cov

PP_2049: Alcohol dehydrogenase, iron-containing
is similar to:
PaperBLAST

I3VSF1: alcohol dehydrogenase (EC 1.1.1.1); L-lactate dehydrogenase (EC 1.1.1.27); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacterium saccharolyticum

33% id,
47% cov

PP_2682: Fe-containing alcohol dehydrogenase
is similar to:
PaperBLAST

I3VSF1: alcohol dehydrogenase (EC 1.1.1.1); L-lactate dehydrogenase (EC 1.1.1.27); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacterium saccharolyticum

31% id,
46% cov

PP_2650: putative 4-hydroxybutyrate dehydrogenase
is similar to:
PaperBLAST

I3VSF1: alcohol dehydrogenase (EC 1.1.1.1); L-lactate dehydrogenase (EC 1.1.1.27); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacterium saccharolyticum

30% id,
44% cov

PP_3646: Aldehyde dehydrogenase family protein
is similar to:
PaperBLAST

I3VSF1: alcohol dehydrogenase (EC 1.1.1.1); L-lactate dehydrogenase (EC 1.1.1.27); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacterium saccharolyticum

24% id,
39% cov

PP_2492: alcohol dehydrogenase, NAD(P)-dependent
is similar to:
PaperBLAST

I3VSF1: alcohol dehydrogenase (EC 1.1.1.1); L-lactate dehydrogenase (EC 1.1.1.27); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacterium saccharolyticum

25% id,
37% cov

PP_0053: putative sulfide:quinone oxidoreductase
is similar to:
PaperBLAST

LDHA_HUMAN / P00338: L-lactate dehydrogenase A chain; LDH-A; Cell proliferation-inducing gene 19 protein; LDH muscle subunit; LDH-M; Renal carcinoma antigen NY-REN-59; EC 1.1.1.27 from Homo sapiens
P00338: L-lactate dehydrogenase (EC 1.1.1.27) from Homo sapiens

39% id,
13% cov

LDHA_PIG / P00339: L-lactate dehydrogenase A chain; LDH-A; LDH muscle subunit; LDH-M; EC 1.1.1.27 from Sus scrofa
P00339: L-lactate dehydrogenase (EC 1.1.1.27) from Sus scrofa

36% id,
13% cov

Q0GND8: L-lactate dehydrogenase (EC 1.1.1.27) from Iguana iguana

42% id,
11% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory