Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas putida KT2440 (Putida)

Found 31 curated entries in PaperBLAST's database that match '1.1.1.28' as complete word(s).

These curated entries have 24 distinct sequences.

Running ublast with E ≤ 0.01

Found 16 relevant proteins in Pseudomonas putida KT2440, or try another query

PP_1649: D-lactate dehydrogenase
is similar to:
PaperBLAST

Q9I530: D-lactate dehydrogenase (EC 1.1.1.28) from Pseudomonas aeruginosa

77% id,
99% cov

Q8EI78: D-lactate dehydrogenase (EC 1.1.1.28) from Shewanella oneidensis

54% id,
98% cov

HtpH / b1380: D-lactate dehydrogenase (EC 1.1.1.28) from Escherichia coli
ldhA: D-lactate dehydrogenase; EC 1.1.1.28 from Escherichia coli
ldhA / P52643: D-lactate dehydrogenase (EC 1.1.1.28) from Escherichia coli

52% id,
100% cov

More...

PP_4316: D-isomer specific 2-hydroxyacid dehydrogenase family protein
is similar to:
PaperBLAST

2KGR_VITVI / A5CAL1: Glyoxylate/hydroxypyruvate/pyruvate reductase 2KGR; 2-keto-L-gulonate reductase; Vv2KGR; EC 1.1.1.26; EC 1.1.1.28; EC 1.1.1.79; EC 1.1.1.- from Vitis vinifera

41% id,
96% cov

Q9I530: D-lactate dehydrogenase (EC 1.1.1.28) from Pseudomonas aeruginosa

32% id,
88% cov

vanH / Q7B609: D-lactate dehydrogenase (EC 1.1.1.28) from Enterococcus faecium

30% id,
80% cov

More...

PP_1707: D-isomer specific 2-hydroxyacid dehydrogenase family protein
is similar to:
PaperBLAST

2KGR_VITVI / A5CAL1: Glyoxylate/hydroxypyruvate/pyruvate reductase 2KGR; 2-keto-L-gulonate reductase; Vv2KGR; EC 1.1.1.26; EC 1.1.1.28; EC 1.1.1.79; EC 1.1.1.- from Vitis vinifera

38% id,
98% cov

A0A0M3KL04: D-lactate dehydrogenase (EC 1.1.1.28) from Sporolactobacillus inulinus

31% id,
83% cov

A0A0R1RJ30: D-lactate dehydrogenase (EC 1.1.1.28) from Furfurilactobacillus rossiae

28% id,
82% cov

More...

PP_3376: putative phosphonate dehydrogenase
is similar to:
PaperBLAST

2KGR_VITVI / A5CAL1: Glyoxylate/hydroxypyruvate/pyruvate reductase 2KGR; 2-keto-L-gulonate reductase; Vv2KGR; EC 1.1.1.26; EC 1.1.1.28; EC 1.1.1.79; EC 1.1.1.- from Vitis vinifera

40% id,
85% cov

Q9I530: D-lactate dehydrogenase (EC 1.1.1.28) from Pseudomonas aeruginosa

35% id,
79% cov

A0A0M3KL04: D-lactate dehydrogenase (EC 1.1.1.28) from Sporolactobacillus inulinus

35% id,
78% cov

More...

PP_1261: 2-ketoaldonate reductase / hydroxypyruvate/glyoxylate reductase
is similar to:
PaperBLAST

2KGR_VITVI / A5CAL1: Glyoxylate/hydroxypyruvate/pyruvate reductase 2KGR; 2-keto-L-gulonate reductase; Vv2KGR; EC 1.1.1.26; EC 1.1.1.28; EC 1.1.1.79; EC 1.1.1.- from Vitis vinifera

34% id,
98% cov

Q9I530: D-lactate dehydrogenase (EC 1.1.1.28) from Pseudomonas aeruginosa

35% id,
84% cov

O66939: D-lactate dehydrogenase (EC 1.1.1.28) from Aquifex aeolicus

32% id,
87% cov

More...

PP_0762: Glycerate dehydrogenase
is similar to:
PaperBLAST

Q9I530: D-lactate dehydrogenase (EC 1.1.1.28) from Pseudomonas aeruginosa

30% id,
99% cov

F8A9V0: D-lactate dehydrogenase (EC 1.1.1.28) from Thermodesulfatator indicus

35% id,
85% cov

O66939: D-lactate dehydrogenase (EC 1.1.1.28) from Aquifex aeolicus

30% id,
87% cov

More...

PP_5154: putative Oxidoreductase, FAD-binding
is similar to:
PaperBLAST

Q9YEU4: D-lactate dehydrogenase (EC 1.1.1.28); D-lactate dehydrogenase (acceptor) (EC 1.1.99.6) from Aeropyrum pernix

30% id,
98% cov

A0A0G2K1W9: D-lactate dehydrogenase (EC 1.1.1.28) from Rattus norvegicus

28% id,
93% cov

G4MWZ3: D-lactate dehydrogenase (EC 1.1.1.28) from Pyricularia oryzae

28% id,
75% cov

PP_5155: D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase
is similar to:
PaperBLAST

O66939: D-lactate dehydrogenase (EC 1.1.1.28) from Aquifex aeolicus

31% id,
93% cov

A0A0M3KL04: D-lactate dehydrogenase (EC 1.1.1.28) from Sporolactobacillus inulinus

37% id,
75% cov

Q1GAA2: D-lactate dehydrogenase (EC 1.1.1.28); D-2-hydroxyacid dehydrogenase (NAD+) (EC 1.1.1.345) from Lactobacillus delbrueckii

30% id,
79% cov

More...

PP_2533: D-isomer specific 2-hydroxyacid dehydrogenase family protein
is similar to:
PaperBLAST

A0A0M3KL04: D-lactate dehydrogenase (EC 1.1.1.28) from Sporolactobacillus inulinus

28% id,
99% cov

F8A9V0: D-lactate dehydrogenase (EC 1.1.1.28) from Thermodesulfatator indicus

28% id,
90% cov

Q8RG11: D-lactate dehydrogenase (EC 1.1.1.28) from Fusobacterium nucleatum

30% id,
79% cov

More...

PP_3745: glycolate oxidase, putative FAD-linked subunit
is similar to:
PaperBLAST

Q9YEU4: D-lactate dehydrogenase (EC 1.1.1.28); D-lactate dehydrogenase (acceptor) (EC 1.1.99.6) from Aeropyrum pernix

29% id,
91% cov

A0A0G2K1W9: D-lactate dehydrogenase (EC 1.1.1.28) from Rattus norvegicus

27% id,
89% cov

G4MWZ3: D-lactate dehydrogenase (EC 1.1.1.28) from Pyricularia oryzae

28% id,
69% cov

PP_2117: Erythronate-4-phosphate dehydrogenase
is similar to:
PaperBLAST

O66939: D-lactate dehydrogenase (EC 1.1.1.28) from Aquifex aeolicus

28% id,
86% cov

F8A9V0: D-lactate dehydrogenase (EC 1.1.1.28) from Thermodesulfatator indicus

30% id,
80% cov

A0A0M3KL04: D-lactate dehydrogenase (EC 1.1.1.28) from Sporolactobacillus inulinus

30% id,
80% cov

More...

PP_3225: D-isomer specific 2-hydroxyacid dehydrogenase family protein
is similar to:
PaperBLAST

O83080: D-lactate dehydrogenase (EC 1.1.1.28) from Treponema pallidum

30% id,
70% cov

F8A9V0: D-lactate dehydrogenase (EC 1.1.1.28) from Thermodesulfatator indicus

31% id,
59% cov

A0A0M3KL04: D-lactate dehydrogenase (EC 1.1.1.28) from Sporolactobacillus inulinus

29% id,
61% cov

More...

PP_4737: D-lactate dehydrogenase
is similar to:
PaperBLAST

A0A0G2K1W9: D-lactate dehydrogenase (EC 1.1.1.28) from Rattus norvegicus

29% id,
58% cov

PP_4589: D-isomer specific 2-hydroxyacid dehydrogenase family protein
is similar to:
PaperBLAST

A0A0M3KL04: D-lactate dehydrogenase (EC 1.1.1.28) from Sporolactobacillus inulinus

27% id,
56% cov

PP_3746: glycolate oxidase, putative FAD-binding subunit
is similar to:
PaperBLAST

G4MWZ3: D-lactate dehydrogenase (EC 1.1.1.28) from Pyricularia oryzae

27% id,
42% cov

Q9YEU4: D-lactate dehydrogenase (EC 1.1.1.28); D-lactate dehydrogenase (acceptor) (EC 1.1.99.6) from Aeropyrum pernix

29% id,
37% cov

PP_4493: putative oxidoreductase
is similar to:
PaperBLAST

Q9YEU4: D-lactate dehydrogenase (EC 1.1.1.28); D-lactate dehydrogenase (acceptor) (EC 1.1.99.6) from Aeropyrum pernix

33% id,
30% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 15 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

5879877-5881313 (frame -3) on AE015451
is similar to:
PaperBLAST

Q9YEU4: D-lactate dehydrogenase (EC 1.1.1.28); D-lactate dehydrogenase (acceptor) (EC 1.1.99.6) from Aeropyrum pernix
Also see hits to annotated proteins above

30% id,
99% cov

A0A0G2K1W9: D-lactate dehydrogenase (EC 1.1.1.28) from Rattus norvegicus
Also see hits to annotated proteins above

29% id,
94% cov

G4MWZ3: D-lactate dehydrogenase (EC 1.1.1.28) from Pyricularia oryzae
Also see hits to annotated proteins above

28% id,
78% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory