Curated BLAST for Genomes


Curated BLAST

Searching in Pseudomonas putida KT2440 (Putida)

Found 35 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 29 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pseudomonas putida KT2440, or try another query

PP_1470: Homoserine dehydrogenase
is similar to:

DHOM_NEIG1 / Q5F8J4: NAD(+)-dependent homoserine dehydrogenase; NAD(+)-dependent HSD; NgHSD; EC from Neisseria gonorrhoeae

58% id,
100% cov

Ga0059261_2711: homoserine dehydrogenase (EC from Sphingomonas koreensis

45% id,
99% cov

D8WXQ1: homoserine dehydrogenase (EC from Bacillus methanolicus

40% id,
99% cov


PP_0664: homoserine dehydrogenase
is similar to:

Q5SL04: homoserine dehydrogenase (EC from Thermus thermophilus

37% id,
94% cov

F9VNG5: homoserine dehydrogenase (EC from Sulfurisphaera tokodaii

32% id,
98% cov

DvMF_1412: homoserine dehydrogenase (EC from Desulfovibrio vulgaris

36% id,
72% cov


PP_4473: aspartokinase
is similar to:

Q9WZ17: homoserine dehydrogenase (EC; aspartate kinase (EC from Thermotoga maritima

46% id,
54% cov

Echvi_2000: aspartate kinase / homoserine dehydrogenase (EC; EC from Echinicola vietnamensis

28% id,
52% cov

BT2403: aspartate kinase / homoserine dehydrogenase (EC; EC from Bacteroides thetaiotaomicron

28% id,
48% cov


The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory