Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas putida KT2440 (Putida)

Found 72 curated entries in PaperBLAST's database that match '1.1.1.42' as complete word(s).

These curated entries have 51 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pseudomonas putida KT2440, or try another query

PP_4011: isocitrate dehydrogenase, NADP(+)-specific
is similar to:
PaperBLAST

IDH_PSEAB / Q02NB5: Isocitrate dehydrogenase [NADP]; IDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Pseudomonas aeruginosa

90% id,
100% cov

Q1XIQ8: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Colwellia psychrerythraea

78% id,
100% cov

IDH_ECOLI / P08200: Isocitrate dehydrogenase [NADP]; IDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Escherichia coli
IcdE / b1136: isocitrate dehydrogenase (EC 1.1.1.42) from Escherichia coli
icd / P08200: isocitrate dehydrogenase (EC 1.1.1.42) from Escherichia coli

76% id,
100% cov

More...

PP_4012: isocitrate dehydrogenase
is similar to:
PaperBLAST

IDH_AZOVI / P16100: Isocitrate dehydrogenase [NADP]; IDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Azotobacter vinelandii
icd / P16100: isocitrate dehydrogenase (NADP-dependent) (EC 1.1.1.42) from Azotobacter vinelandii

78% id,
99% cov

idh / Q8L0X8: isocitrate dehydrogenase (EC 1.1.1.42) from Chlorobium limicola

69% id,
100% cov

B2ZAA4: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Streptomyces lividans

67% id,
100% cov

More...

PP_1988: 3-isopropylmalate dehydrogenase
is similar to:
PaperBLAST

P96318: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Caldococcus noboribetus

30% id,
90% cov

Q1GZD1: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Methylobacillus flagellatus

28% id,
92% cov

Q9YE81: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Aeropyrum pernix

27% id,
89% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory