Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas putida KT2440 (Putida)

Found 40 curated entries in PaperBLAST's database that match '1.1.99.2'.

These curated entries have 32 distinct sequences.

Running ublast with E ≤ 0.01

Found 14 relevant proteins in Pseudomonas putida KT2440, or try another query

PP_2910: L-2-hydroxyglutarate oxidase
is similar to:
PaperBLAST

L2HDH_INDAL / S2DJ52: L-2-hydroxyglutarate dehydrogenase; EC 1.1.99.2 from Indibacter alkaliphilus

44% id,
98% cov

L2HDH_HUMAN / Q9H9P8: L-2-hydroxyglutarate dehydrogenase, mitochondrial; Duranin; EC 1.1.99.2 from Homo sapiens
Q9H9P8: L-2-hydroxyglutarate dehydrogenase (EC 1.1.99.2) from Homo sapiens

43% id,
90% cov

L2HDH_ACCSB / A0A011QK89: L-2-hydroxyglutarate dehydrogenase; EC 1.1.99.2 from Accumulibacter sp.

32% id,
70% cov

More...

PP_1949: Oxidoreductase, GMC family
is similar to:
PaperBLAST

Q2HXX0: alkan-1-ol dehydrogenase (acceptor) (EC 1.1.99.20) from Ensifer sp.

40% id,
96% cov

PDH1_AGABI / Q3L1D1: Pyranose dehydrogenase; PDH; Glucose dehydrogenase; GDH; Pyranose 2-dehydrogenase; Pyranose:quinone oxidoreductase; EC 1.1.99.29 from Agaricus bisporus
Q3L1D1: pyranose dehydrogenase (acceptor) (EC 1.1.99.29) from Agaricus bisporus

37% id,
52% cov

PDH3_LEUMG / Q0R4L2: Pyranose dehydrogenase 3; PDH 3; Pyranose:quinone oxidoreductase 3; EC 1.1.99.29 from Leucoagaricus meleagris
Q0R4L2: pyranose dehydrogenase (acceptor) (EC 1.1.99.29) from Leucoagaricus meleagris

37% id,
51% cov

More...

PP_5064: choline dehydrogenase
is similar to:
PaperBLAST

Q2HXX0: alkan-1-ol dehydrogenase (acceptor) (EC 1.1.99.20) from Ensifer sp.

39% id,
97% cov

PDH1_AGABI / Q3L1D1: Pyranose dehydrogenase; PDH; Glucose dehydrogenase; GDH; Pyranose 2-dehydrogenase; Pyranose:quinone oxidoreductase; EC 1.1.99.29 from Agaricus bisporus
Q3L1D1: pyranose dehydrogenase (acceptor) (EC 1.1.99.29) from Agaricus bisporus

30% id,
92% cov

PDH2_LEUMG / Q3L243: Pyranose dehydrogenase 2; PDH 2; Pyranose:quinone oxidoreductase 2; EC 1.1.99.29 from Leucoagaricus meleagris
Q3L243: pyranose dehydrogenase (acceptor) (EC 1.1.99.29) from Leucoagaricus meleagris

30% id,
93% cov

More...

PP_3569: quinate dehydrogenase (quinone)
is similar to:
PaperBLAST

sldA / Q8KIL1: D-sorbitol dehydrogenase large subunit (EC 1.1.99.21) from Gluconobacter thailandicus

38% id,
98% cov

Q70JN9: gluconate 5-dehydrogenase (EC 1.1.1.69); D-sorbitol dehydrogenase (acceptor) (subunit 1/2) (EC 1.1.99.21) from Gluconobacter oxydans

40% id,
87% cov

PP_1444: quinoprotein glucose dehydrogenase
is similar to:
PaperBLAST

Q70JN9: gluconate 5-dehydrogenase (EC 1.1.1.69); D-sorbitol dehydrogenase (acceptor) (subunit 1/2) (EC 1.1.99.21) from Gluconobacter oxydans

39% id,
88% cov

sldA / Q8KIL1: D-sorbitol dehydrogenase large subunit (EC 1.1.99.21) from Gluconobacter thailandicus

38% id,
88% cov

Q70JP0: gluconate 5-dehydrogenase (EC 1.1.1.69); D-sorbitol dehydrogenase (acceptor) (subunit 2/2) (EC 1.1.99.21) from Gluconobacter oxydans

36% id,
90% cov

PP_0056: choline dehydrogenase
is similar to:
PaperBLAST

Q2HXX0: alkan-1-ol dehydrogenase (acceptor) (EC 1.1.99.20) from Ensifer sp.

36% id,
95% cov

PDH1_AGABI / Q3L1D1: Pyranose dehydrogenase; PDH; Glucose dehydrogenase; GDH; Pyranose 2-dehydrogenase; Pyranose:quinone oxidoreductase; EC 1.1.99.29 from Agaricus bisporus
Q3L1D1: pyranose dehydrogenase (acceptor) (EC 1.1.99.29) from Agaricus bisporus

32% id,
94% cov

PDH3_LEUMG / Q0R4L2: Pyranose dehydrogenase 3; PDH 3; Pyranose:quinone oxidoreductase 3; EC 1.1.99.29 from Leucoagaricus meleagris
Q0R4L2: pyranose dehydrogenase (acceptor) (EC 1.1.99.29) from Leucoagaricus meleagris

31% id,
94% cov

More...

PP_2803: 1,3-propanediol dehydrogenase
is similar to:
PaperBLAST

T0Q1Z2: hydroxyacid-oxoacid transhydrogenase (EC 1.1.99.24) from Saprolegnia diclina

30% id,
88% cov

W4G0G7: hydroxyacid-oxoacid transhydrogenase (EC 1.1.99.24) from Aphanomyces astaci

30% id,
87% cov

A0A067BRK4: hydroxyacid-oxoacid transhydrogenase (EC 1.1.99.24) from Saprolegnia parasitica

30% id,
88% cov

More...

PP_2682: Fe-containing alcohol dehydrogenase
is similar to:
PaperBLAST

A0A067BRK4: hydroxyacid-oxoacid transhydrogenase (EC 1.1.99.24) from Saprolegnia parasitica

26% id,
98% cov

T0Q1Z2: hydroxyacid-oxoacid transhydrogenase (EC 1.1.99.24) from Saprolegnia diclina

26% id,
98% cov

A0A0L0DHP5: hydroxyacid-oxoacid transhydrogenase (EC 1.1.99.24) from Thecamonas trahens

27% id,
91% cov

More...

PP_2049: Alcohol dehydrogenase, iron-containing
is similar to:
PaperBLAST

T0Q1Z2: hydroxyacid-oxoacid transhydrogenase (EC 1.1.99.24) from Saprolegnia diclina

26% id,
97% cov

B7FWP2: hydroxyacid-oxoacid transhydrogenase (EC 1.1.99.24) from Phaeodactylum tricornutum

28% id,
89% cov

A0A067BRK4: hydroxyacid-oxoacid transhydrogenase (EC 1.1.99.24) from Saprolegnia parasitica

26% id,
97% cov

More...

PP_2650: putative 4-hydroxybutyrate dehydrogenase
is similar to:
PaperBLAST

HOT_MOUSE / Q8R0N6: Hydroxyacid-oxoacid transhydrogenase, mitochondrial; HOT; Alcohol dehydrogenase iron-containing protein 1; ADHFe1; EC 1.1.99.24 from Mus musculus

27% id,
89% cov

HOT_RAT / Q4QQW3: Hydroxyacid-oxoacid transhydrogenase, mitochondrial; HOT; Alcohol dehydrogenase iron-containing protein 1; ADHFe1; EC 1.1.99.24 from Rattus norvegicus

27% id,
89% cov

S5YSM1: hydroxyacid-oxoacid transhydrogenase (EC 1.1.99.24) from Bemisia tabaci

27% id,
87% cov

More...

PP_2674: quinoprotein ethanol dehydrogenase
is similar to:
PaperBLAST

Q70JN9: gluconate 5-dehydrogenase (EC 1.1.1.69); D-sorbitol dehydrogenase (acceptor) (subunit 1/2) (EC 1.1.99.21) from Gluconobacter oxydans

22% id,
56% cov

sldA / Q8KIL1: D-sorbitol dehydrogenase large subunit (EC 1.1.99.21) from Gluconobacter thailandicus

27% id,
23% cov

PP_2679: quinoprotein ethanol dehydrogenase
is similar to:
PaperBLAST

sldA / Q8KIL1: D-sorbitol dehydrogenase large subunit (EC 1.1.99.21) from Gluconobacter thailandicus

24% id,
27% cov

Q70JN9: gluconate 5-dehydrogenase (EC 1.1.1.69); D-sorbitol dehydrogenase (acceptor) (subunit 1/2) (EC 1.1.99.21) from Gluconobacter oxydans

23% id,
27% cov

PP_1255: putative cis-4-hydroxy-D-proline oxidase
is similar to:
PaperBLAST

L2HDH_ACCSB / A0A011QK89: L-2-hydroxyglutarate dehydrogenase; EC 1.1.99.2 from Accumulibacter sp.

35% id,
15% cov

PP_4983: putative amine oxidase
is similar to:
PaperBLAST

L2HDH_ARATH / Q9LES4: L-2-hydroxyglutarate dehydrogenase, mitochondrial; EC 1.1.99.2 from Arabidopsis thaliana

34% id,
13% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 15 reading frames. Except for 3 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

3194888-3196144 (frame -1) on AE015451
is similar to:
PaperBLAST

T0Q1Z2: hydroxyacid-oxoacid transhydrogenase (EC 1.1.99.24) from Saprolegnia diclina
Also see hits to annotated proteins above

30% id,
93% cov

A0A067BRK4: hydroxyacid-oxoacid transhydrogenase (EC 1.1.99.24) from Saprolegnia parasitica
Also see hits to annotated proteins above

30% id,
93% cov

X6NPJ7: hydroxyacid-oxoacid transhydrogenase (EC 1.1.99.24) from Reticulomyxa filosa
Also see hits to annotated proteins above

31% id,
85% cov

More...

3070797-3072305 (frame +3) on AE015451
is similar to:
PaperBLAST

A0A067BRK4: hydroxyacid-oxoacid transhydrogenase (EC 1.1.99.24) from Saprolegnia parasitica
Also see hits to annotated proteins above

26% id,
99% cov

T0Q1Z2: hydroxyacid-oxoacid transhydrogenase (EC 1.1.99.24) from Saprolegnia diclina
Also see hits to annotated proteins above

26% id,
99% cov

B7FWP2: hydroxyacid-oxoacid transhydrogenase (EC 1.1.99.24) from Phaeodactylum tricornutum
Also see hits to annotated proteins above

26% id,
93% cov

More...

2331421-2332614 (frame +1) on AE015451
is similar to:
PaperBLAST

T0Q1Z2: hydroxyacid-oxoacid transhydrogenase (EC 1.1.99.24) from Saprolegnia diclina
Also see hits to annotated proteins above

26% id,
99% cov

K0T042: hydroxyacid-oxoacid transhydrogenase (EC 1.1.99.24) from Thalassiosira oceanica
Also see hits to annotated proteins above

27% id,
95% cov

A0A067BRK4: hydroxyacid-oxoacid transhydrogenase (EC 1.1.99.24) from Saprolegnia parasitica
Also see hits to annotated proteins above

25% id,
99% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory