Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas putida KT2440 (Putida)

Found 11 curated entries in PaperBLAST's database that match '1.1.99.39'.

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Pseudomonas putida KT2440, or try another query

PP_4493: putative oxidoreductase
is similar to:
PaperBLAST

ydiJ / Q88EH0: (R)-2-hydroxyglutarate dehydrogenase (EC 1.1.99.39) from Pseudomonas putida
PP_4493: D-2-hydroxyglutarate dehydrogenase (EC 1.1.99.39) from Pseudomonas putida

100% id,
100% cov

PP_5154: putative Oxidoreductase, FAD-binding
is similar to:
PaperBLAST

D2HDH_PSEU5 / A4VGK4: D-2-hydroxyglutarate dehydrogenase; D-2-HG dehydrogenase; D2HGDH; D-malate dehydrogenase; EC 1.1.99.39; EC 1.1.99.- from Pseudomonas stutzeri

87% id,
97% cov

D2HDH_XANCL / P0DV35: D-2-hydroxyglutarate dehydrogenase; D2HGDH; EC 1.1.99.39 from Xanthomonas citri

56% id,
94% cov

D2HDH_HUMAN / Q8N465: D-2-hydroxyglutarate dehydrogenase, mitochondrial; EC 1.1.99.39 from Homo sapiens
D2HGDH / Q8N465: D-2-hydroxyglutarate dehydrogenase, mitochondrial (EC 1.1.99.39) from Homo sapiens
Q8N465: D-2-hydroxyglutarate dehydrogenase (EC 1.1.99.39) from Homo sapiens

38% id,
85% cov

More...

PP_3745: glycolate oxidase, putative FAD-linked subunit
is similar to:
PaperBLAST

D2HDH_XANCL / P0DV35: D-2-hydroxyglutarate dehydrogenase; D2HGDH; EC 1.1.99.39 from Xanthomonas citri

31% id,
97% cov

D2HDH_PSEU5 / A4VGK4: D-2-hydroxyglutarate dehydrogenase; D-2-HG dehydrogenase; D2HGDH; D-malate dehydrogenase; EC 1.1.99.39; EC 1.1.99.- from Pseudomonas stutzeri

29% id,
98% cov

D2HDH_HUMAN / Q8N465: D-2-hydroxyglutarate dehydrogenase, mitochondrial; EC 1.1.99.39 from Homo sapiens
D2HGDH / Q8N465: D-2-hydroxyglutarate dehydrogenase, mitochondrial (EC 1.1.99.39) from Homo sapiens
Q8N465: D-2-hydroxyglutarate dehydrogenase (EC 1.1.99.39) from Homo sapiens

30% id,
84% cov

More...

PP_4737: D-lactate dehydrogenase
is similar to:
PaperBLAST

D2HDH_ARATH / O23240: D-2-hydroxyglutarate dehydrogenase, mitochondrial; AtD-2HGDH; EC 1.1.99.39 from Arabidopsis thaliana
O23240: D-2-hydroxyglutarate dehydrogenase (EC 1.1.99.39) from Arabidopsis thaliana

27% id,
61% cov

D2HDH_PSEU5 / A4VGK4: D-2-hydroxyglutarate dehydrogenase; D-2-HG dehydrogenase; D2HGDH; D-malate dehydrogenase; EC 1.1.99.39; EC 1.1.99.- from Pseudomonas stutzeri

25% id,
61% cov

D2HDH_XANCL / P0DV35: D-2-hydroxyglutarate dehydrogenase; D2HGDH; EC 1.1.99.39 from Xanthomonas citri

27% id,
36% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory